Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_J10
(989 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens ... 37 0.099
BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein. 34 0.70
BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein. 34 0.70
DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid b... 33 1.2
U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding prot... 32 3.7
M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein. 32 3.7
DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid b... 32 3.7
DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid b... 32 3.7
BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (... 32 3.7
BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger, ... 32 3.7
AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9 p... 32 3.7
AB212622-1|BAD97692.1| 3631|Homo sapiens CSMD2 protein protein. 31 6.5
>AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ30030 fis, clone 3NB692001339, highly similar to
CELLULAR NUCLEIC ACID BINDING PROTEIN. ).
Length = 167
Score = 37.1 bits (82), Expect = 0.099
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = +2
Query: 260 MSSSVXYKXXRNGYFARECTQGGRXVXGFR------FQSXX*QVXQVHRTGXXXXDXXEQ 421
MSS+ +K R+G++AREC GG G R F S + +G D Q
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRDICYRCGESGHLAKDCDLQ 60
Query: 422 AXXWXXCNGPGHIARDXR 475
C GHIA+D +
Sbjct: 61 EDACYNCGRGGHIAKDCK 78
>BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 34.3 bits (75), Expect = 0.70
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Frame = +2
Query: 260 MSSSVXYKXXRNGYFARECTQGGRXVXGFR-----FQSXX*QVXQV----HRTGXXXXDX 412
MSS+ +K R+G++AREC GG G R FQ + + +G D
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 413 XEQAXXWXXCNGPGHIARDXR 475
Q C GHIA+D +
Sbjct: 61 DLQEDACYNCGRGGHIAKDCK 81
>BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 34.3 bits (75), Expect = 0.70
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Frame = +2
Query: 260 MSSSVXYKXXRNGYFARECTQGGRXVXGFR-----FQSXX*QVXQV----HRTGXXXXDX 412
MSS+ +K R+G++AREC GG G R FQ + + +G D
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 413 XEQAXXWXXCNGPGHIARDXR 475
Q C GHIA+D +
Sbjct: 61 DLQEDACYNCGRGGHIAKDCK 81
>DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid
binding protein beta variant 2 protein.
Length = 172
Score = 33.5 bits (73), Expect = 1.2
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Frame = +2
Query: 260 MSSSVXYKXXRNGYFARECTQGGRXVXGFR-----FQSXX*QVXQV-HRTG-----XXXX 406
MSS+ +K R+G++AREC GG G R FQ + + +R G
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 407 DXXEQAXXWXXCNGPGHIARDXR 475
D E C GHIA+D +
Sbjct: 61 DLQEDVEACYNCGRGGHIAKDCK 83
>U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding protein
protein.
Length = 177
Score = 31.9 bits (69), Expect = 3.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 260 MSSSVXYKXXRNGYFARECTQGGRXVXGFR 349
MSS+ +K R+G++AREC GG G R
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR 30
>M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein.
Length = 177
Score = 31.9 bits (69), Expect = 3.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 260 MSSSVXYKXXRNGYFARECTQGGRXVXGFR 349
MSS+ +K R+G++AREC GG G R
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR 30
>DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid
binding protein beta variant 1 protein.
Length = 171
Score = 31.9 bits (69), Expect = 3.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 260 MSSSVXYKXXRNGYFARECTQGGRXVXGFR 349
MSS+ +K R+G++AREC GG G R
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR 30
>DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid
binding protein alpha variant 1 protein.
Length = 178
Score = 31.9 bits (69), Expect = 3.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 260 MSSSVXYKXXRNGYFARECTQGGRXVXGFR 349
MSS+ +K R+G++AREC GG G R
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR 30
>BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (a
cellular retroviral nucleic acid binding protein)
protein.
Length = 178
Score = 31.9 bits (69), Expect = 3.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 260 MSSSVXYKXXRNGYFARECTQGGRXVXGFR 349
MSS+ +K R+G++AREC GG G R
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR 30
>BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger,
nucleic acid binding protein protein.
Length = 177
Score = 31.9 bits (69), Expect = 3.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 260 MSSSVXYKXXRNGYFARECTQGGRXVXGFR 349
MSS+ +K R+G++AREC GG G R
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR 30
>AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9
protein.
Length = 177
Score = 31.9 bits (69), Expect = 3.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 260 MSSSVXYKXXRNGYFARECTQGGRXVXGFR 349
MSS+ +K R+G++AREC GG G R
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR 30
>AB212622-1|BAD97692.1| 3631|Homo sapiens CSMD2 protein protein.
Length = 3631
Score = 31.1 bits (67), Expect = 6.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 543 PGTXPRXGRPPXXCPPPXLLI 605
PG R GRPP PPP LL+
Sbjct: 30 PGAGSRWGRPPPPTPPPLLLL 50
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,183,763
Number of Sequences: 237096
Number of extensions: 947350
Number of successful extensions: 2564
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2550
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 13269380858
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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