Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_J07
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    68   2e-12
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   7.5  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 31/66 (46%), Positives = 42/66 (63%)
 Frame = +1

Query: 40  ALKRXCYRXXTVXLXXRLHGVGFKKRAPXAXKXIRKFAEKQXGTPDIRVXTRLNKFLWSK 219
           A+ +   R  T+ +  RL+GV FKKRAP A K I  FA+K   T ++RV   LNK +W +
Sbjct: 8   AINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVWKR 67

Query: 220 GVRNVP 237
           G+RNVP
Sbjct: 68  GIRNVP 73


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 383 GVYSWLASTFSVCKPLID 330
           GV  WLAST+S C  +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,432,813
Number of Sequences: 5004
Number of extensions: 15284
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)