Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_J05
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    32   0.12 
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    30   0.49 
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    27   4.6  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   6.1  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    26   6.1  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   8.1  

>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +1

Query: 487 NILMSSLENASFNILIQILFRCITFXINAWVIRNVGHEILGIMNVRXXXXXSTILFLXRE 666
           ++L SS +    +I  Q   R +TF +N   IR          ++      STILFL RE
Sbjct: 6   SLLQSSSKGLRSSIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTILFLSRE 65


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -2

Query: 189 IWSGILSIIAATIFTIQSLGGNSKNKTYDP 100
           +WS +L+++   +FT+ +L  N+ N +YDP
Sbjct: 703 VWSTVLAVLQRDVFTLYNL--NTPNLSYDP 730


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
 Frame = +2

Query: 239 ELENDERIATIITDLITLSNEVDSVAFGPSEN------------FKKISITFDDHWYIVC 382
           ++++ ERI  ++ D IT S   DS+   P EN              K  I +  +WY + 
Sbjct: 102 DIDSSERIR-LVYDKITGSKTEDSLGICPGENPYADIISIFPLHQPKFDIKWSKYWYQLL 160

Query: 383 LSNKK 397
           L NKK
Sbjct: 161 LGNKK 165


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 169 HYSCNDFHNSVTWRKQQK 116
           HY+ N FH+ + W  QQ+
Sbjct: 916 HYNANIFHDFINWGAQQR 933


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 47  GSGWWVGTYLAFFIKDIT 100
           G  +W GTY+  F+ +IT
Sbjct: 237 GDNYWAGTYMGDFVSNIT 254


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 29/102 (28%), Positives = 40/102 (39%)
 Frame = +2

Query: 149 KIVAAIMDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPS 328
           K V AI   +   IGY V    GAVL      E D R   ++ D  +L   +  ++    
Sbjct: 407 KDVTAISQVLWGSIGYSVGAMFGAVLAVHDSKEPDRRTILVVGD-GSLQLTITEISTCIR 465

Query: 329 ENFKKISITFDDHWYIVCLSNKKIYVVKRNIHTPLRESNEIN 454
            N K           I+ + N   Y ++R IH      NEIN
Sbjct: 466 HNLKP----------IIFIINNDGYTIERLIHGLHASYNEIN 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,967,470
Number of Sequences: 5004
Number of extensions: 55637
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)