Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_J05
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0410 - 17827970-17828039,17828132-17828304,17828385-178284...    40   0.003
09_02_0470 + 9629062-9629355,9629948-9630893,9630948-9631102,963...    29   3.7  
07_03_0687 - 20698778-20700029,20700815-20700819                       29   6.4  

>07_03_0410 -
           17827970-17828039,17828132-17828304,17828385-17828437,
           17828554-17828676,17829337-17829408,17829902-17829976,
           17830065-17830169,17831891-17832042,17833326-17833420,
           17833813-17833892,17833984-17834071
          Length = 361

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +1

Query: 520 FNILIQILFRCITFXINAWVIRNVGHEILGIMNVRXXXXXSTILFLXREPFNRACLXRTD 699
           +N   Q L R   F  N+W +R +  +      ++     + +LFL RE F RACL    
Sbjct: 27  YNFAAQFLSRVTPFLYNSWFVRQLSADDCAAYALQLPLFINCVLFLSREGFRRACLRNDS 86

Query: 700 GFG 708
             G
Sbjct: 87  DSG 89


>09_02_0470 +
           9629062-9629355,9629948-9630893,9630948-9631102,
           9631299-9631358,9633374-9633444,9633626-9633663,
           9633824-9633876,9633970-9635235,9635632-9635672,
           9636821-9636887
          Length = 996

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +2

Query: 197 LVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKISITFDDHWYI 376
           L+ T+   ++E    L   E+   II   +T S+EV +   G   ++K   ++ DD W I
Sbjct: 279 LISTDKNQLIELKEMLRGTEKCTKII---VTTSSEVSADLIGTVPSYKLHPLSDDDCWGI 335

Query: 377 VC 382
            C
Sbjct: 336 FC 337


>07_03_0687 - 20698778-20700029,20700815-20700819
          Length = 418

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 13  RLTIGNP*DFFWKWVVGRYLPSFFYKRYNRIIGLVFAVS 129
           ++ +  P D  WKWV   Y+P F  +    + G  +AVS
Sbjct: 176 KVAVARPGDSHWKWV---YVPHFHLESAASLAGCFYAVS 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,981,907
Number of Sequences: 37544
Number of extensions: 314192
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)