Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_J04
         (933 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.046
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    24   1.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   9.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 0.046
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +2

Query: 731 GPPPPXXXPQXXPXPXXGGAPPPGGXXXXPXLPPPXPPPXPP 856
           G P P   P   P     G+PP       P  PP  PP   P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.4 bits (53), Expect = 0.74
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +1

Query: 739 PPPXXXPXXPPXXGGGGXPPRGGXXXXPAAPXXXPPPXPP 858
           P P   P   P     G PP       P  P   PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +3

Query: 621 GXPPPRGXPPPXXXXPPPRPXXPPPXXPGXRGGXXPXGPP 740
           G P P+  P P      P+   PP    G   G  P  PP
Sbjct: 19  GAPGPQ--PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +1

Query: 784 GGXPPRGGXXXXPAAPXXXPPPXPPRPPP 870
           G   P+      P AP    PP P + PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPP 47


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/60 (26%), Positives = 17/60 (28%)
 Frame = +3

Query: 651 PXXXXPPPRPXXPPPXXPGXRGGXXPXGPPPPXXXPKXXPXXRXGGXPPPGGXXPXPXCP 830
           P    P PR    P   PG         P PP    +  P    G   P     P P  P
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 166


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 827 PPPXPPPXPP 856
           P P PPP PP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 841 PPPXPPRPPP 870
           P P PP PPP
Sbjct: 339 PKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 778  GGGGXPPRGGXXXXPAAPXXXPPPXPPR 861
            G  G    G     P +    PPP PPR
Sbjct: 1838 GSVGRRSVGSARNIPVSGSPEPPPPPPR 1865


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 866  GGRGGXGGGXXXGAAG 819
            GG GG GG     AAG
Sbjct: 1714 GGLGGLGGAAEASAAG 1729


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 866  GGRGGXGGGXXXGAAG 819
            GG GG GG     AAG
Sbjct: 1710 GGLGGLGGAAEASAAG 1725


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.156    0.566 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,957
Number of Sequences: 438
Number of extensions: 11135
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)