Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_J03
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0044 - 25150322-25151260 32 0.52
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 32 0.69
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 31 1.6
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458... 31 1.6
11_02_0011 - 7337618-7338496,7338596-7338991 29 4.9
02_04_0632 + 24614659-24615528,24615636-24616133 29 4.9
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 29 4.9
01_06_0824 - 32243495-32244319,32244449-32244859 29 6.4
11_02_0012 - 7346282-7347136,7347234-7347593 28 8.5
>05_06_0044 - 25150322-25151260
Length = 312
Score = 32.3 bits (70), Expect = 0.52
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 472 EGDYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTNXRIKDLLS 633
+ L+P A VF A N AAA IN+W ++T +KD+LS
Sbjct: 6 DASLRLNPAFADTAASVFKAAVRSAG--NPAAARAEINEWFSSQTGGFVKDILS 57
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 31.9 bits (69), Expect = 0.69
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 562 AAAAGLINKWVENKTNXRIKDLLSEXXLXSXTRLXLG 672
A A +N WVE T+ IK++L + TRL LG
Sbjct: 211 AEVASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVLG 247
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 562 AAAAGLINKWVENKTNXRIKDLLSEXXLXSXTRLXLG 672
A A +N WV+ T+ IK++L + TRL LG
Sbjct: 3 AEVASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLG 39
>01_03_0200 +
13744735-13745037,13745071-13745610,13745704-13745862,
13748992-13749123,13749282-13749472,13749541-13749792,
13750248-13750323,13750411-13750602,13750688-13750689,
13753230-13753287,13753736-13754941
Length = 1036
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 152 YLHYWK*RTLXLXYGFKGFILCNHQVLCKVLQ*TG 256
+LH+ R + Y FKG ILC + C+ L+ TG
Sbjct: 510 FLHFQNKRVIKATYNFKGTILCGYYA-CEYLRVTG 543
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 252 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITDDDTI 386
+ KN+V SP S LAL+ G +ELL LG D +
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDL 71
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +1
Query: 484 ELDPKLKKDAVEVFDADFEKVNFDNGAAAAGL-INKWVENKTNXRIKDLLSEXXLXSXTR 660
EL P + A + A NF + INKWV TN I ++L + + T
Sbjct: 107 ELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNKLIPEILPDGSVHVDTA 166
Query: 661 LXL 669
L L
Sbjct: 167 LVL 169
>02_04_0632 + 24614659-24615528,24615636-24616133
Length = 455
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = -2
Query: 376 SSVIPRLVNSSSCAGSVVPKVINASKYSA----DNGDD 275
++V P L+ +G+ PK+ NAS Y+A DNGDD
Sbjct: 71 TAVDPSLMGFVLISGTQFPKINNASAYAAADPGDNGDD 108
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -2
Query: 433 PFIDF--NFDDTAENDERIVSSSVIPRLVNSSSCAGSVVPKVINASKYSADNG 281
PF+ F +DD +++R V+S I +SCAGSV+ + ++ +K D G
Sbjct: 84 PFLYFMVQYDDILFHEKRRVTSVTIDFTFGLNSCAGSVI-RDLHIAKQEEDIG 135
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 523 FDADFEKVNF-DNGAAAAGLINKWVENKTNXRIKDLLSEXXLXSXTRLXLG 672
+ A+ V+F D A IN+W E+ T RIKD L + + T LG
Sbjct: 125 YRAEARPVSFRDKLEEARREINEWFESATAGRIKDFLPKDAVDRATPAVLG 175
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 255 DKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITDDDTI 386
+ +NVV SP+S LAL+ G +EL+ LG D +
Sbjct: 28 NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDL 71
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 580 INKWVENKTNXRIKDLLSEXXLXSXTRLXL 669
INKWV TN I+++L + + T L L
Sbjct: 128 INKWVSKATNKLIREILPDGSVHGGTALVL 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,755,820
Number of Sequences: 37544
Number of extensions: 274414
Number of successful extensions: 588
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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