Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I24
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    53   6e-08
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    31   0.29 

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = +3

Query: 411 KXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
           + + C   GH  R+C +     Y CN TGH A E  +   E +CY     GH+ R+CP
Sbjct: 18  RCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCP 74



 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 21/55 (38%), Positives = 25/55 (45%)
 Frame = +3

Query: 417 FKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNC 581
           + C   GH  RDC       Y C   GH + E  Q+ D   CY  N+ GHI  NC
Sbjct: 119 YACGSYGHQARDCTMGVKC-YSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172



 Score = 32.7 bits (71), Expect = 0.073
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 16/79 (20%)
 Frame = +3

Query: 402 QXEKXFKCNXTGHFXRDCKEEXD-----XXYRCNXTGHIAXEXAQSPDEP---------- 536
           Q +  + C   GH  RDC    +       Y+C   GHIA +   +  +           
Sbjct: 56  QEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSN 115

Query: 537 -SCYNXNKXGHIXRNCPEG 590
            +CY     GH  R+C  G
Sbjct: 116 MNCYACGSYGHQARDCTMG 134



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 13/79 (16%)
 Frame = +3

Query: 402 QXEKXFKCNXTGHFXRDCKEEXD-------------XXYRCNXTGHIAXEXAQSPDEPSC 542
           Q  + +KC   GH  RDC+                   Y C   GH A +         C
Sbjct: 81  QGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG---VKC 137

Query: 543 YNXNKXGHIXRNCPEGGXG 599
           Y+  K GH    C +   G
Sbjct: 138 YSCGKIGHRSFECQQASDG 156



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +3

Query: 477 YRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCPE 587
           Y C   GH A E  +      CYN N+ GH    C E
Sbjct: 20  YNCGENGHQARECTKGS---ICYNCNQTGHKASECTE 53



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 534 PSCYNXNKXGHIXRNCPEG 590
           P CYN  + GH  R C +G
Sbjct: 17  PRCYNCGENGHQARECTKG 35


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
 Frame = +3

Query: 417 FKCNXTGHFXRDCKEEXD---XXYRCNXTGHIAXEXA-QSPDE-PSCYNXNKXGHIXRNC 581
           F C   GH  +DC E  D     +RC    H     + + P +   C+  ++ GH+   C
Sbjct: 80  FACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQC 139

Query: 582 PEGGXGV 602
            +   G+
Sbjct: 140 EQNPKGL 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,243,522
Number of Sequences: 5004
Number of extensions: 11949
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)