Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_I24
(900 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens ... 55 4e-07
U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding prot... 53 1e-06
M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein. 53 1e-06
BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger, ... 53 1e-06
BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein. 53 1e-06
BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein. 53 1e-06
AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9 p... 53 1e-06
DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid b... 50 9e-06
DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid b... 50 9e-06
DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid b... 50 9e-06
BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (... 50 9e-06
BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domai... 47 1e-04
AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid b... 43 0.001
Z95329-1|CAI21661.2| 250|Homo sapiens lin-28 homolog B (C. eleg... 32 3.3
DQ127228-1|AAZ38897.1| 250|Homo sapiens LIN28B protein. 32 3.3
BC150538-1|AAI50539.1| 227|Homo sapiens Unknown (protein for IM... 32 3.3
BC150537-1|AAI50538.1| 227|Homo sapiens Unknown (protein for IM... 32 3.3
BC141960-1|AAI41961.1| 227|Homo sapiens LIN28B protein protein. 32 3.3
BC127713-1|AAI27714.1| 227|Homo sapiens LIN28B protein protein. 32 3.3
BC127712-1|AAI27713.1| 227|Homo sapiens LIN28B protein protein. 32 3.3
AL135911-2|CAI20969.2| 250|Homo sapiens lin-28 homolog B (C. el... 32 3.3
AK131411-1|BAD18558.1| 250|Homo sapiens protein ( Homo sapiens ... 32 3.3
BC005990-1|AAH05990.1| 405|Homo sapiens Unknown (protein for IM... 31 7.5
BC032736-1|AAH32736.1| 271|Homo sapiens ZCCHC9 protein protein. 30 10.0
BC014841-1|AAH14841.1| 274|Homo sapiens ZCCHC9 protein protein. 30 10.0
>AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ30030 fis, clone 3NB692001339, highly similar to
CELLULAR NUCLEIC ACID BINDING PROTEIN. ).
Length = 167
Score = 54.8 bits (126), Expect = 4e-07
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +3
Query: 330 TGPGISRXNARRGAVVSRDSXFNXQXEKXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAX 509
TG G R RG F + ++C +GH +DC + D Y C GHIA
Sbjct: 21 TGGGRGRGMRSRGR-----GGFTSDRDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAK 75
Query: 510 EXAQ--SPDEPSCYNXNKXGHIXRNC 581
+ + E CYN K GH+ R+C
Sbjct: 76 DCKEPKREREQCCYNCGKPGHLARDC 101
Score = 49.2 bits (112), Expect = 2e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 408 EKXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNC 581
+K + C GH +DC + YRC TGH+A +++ E +CY + GH+ R C
Sbjct: 107 QKCYSCGEFGHIQKDCTKVK--CYRCGETGHVAINCSKT-SEVNCYRCGESGHLAREC 161
Score = 48.4 bits (110), Expect = 4e-05
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +3
Query: 402 QXEKXFKCNXTGHFXRDCKE----EXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHI 569
Q + + C GH +DCKE Y C GH+A + + DE CY+ + GHI
Sbjct: 60 QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA-DEQKCYSCGEFGHI 118
Query: 570 XRNC 581
++C
Sbjct: 119 QKDC 122
Score = 41.9 bits (94), Expect = 0.003
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 18/75 (24%)
Frame = +3
Query: 417 FKCNXTGHFXRDCK------------------EEXDXXYRCNXTGHIAXEXAQSPDEPSC 542
FKC +GH+ R+C + D YRC +GH+A + D +C
Sbjct: 7 FKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRDICYRCGESGHLAKDCDLQED--AC 64
Query: 543 YNXNKXGHIXRNCPE 587
YN + GHI ++C E
Sbjct: 65 YNCGRGGHIAKDCKE 79
Score = 30.7 bits (66), Expect = 7.5
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 302 MSSSXXYKXNRTGHFAXXC-TQGGRG 376
MSS+ +K R+GH+A C T GGRG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRG 26
>U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding protein
protein.
Length = 177
Score = 53.2 bits (122), Expect = 1e-06
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 417 FKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQ--SPDEPSCYNXNKXGHIXRNC 581
++C +GH +DC + D Y C GHIA + + E CYN K GH+ R+C
Sbjct: 55 YRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 49.2 bits (112), Expect = 2e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 408 EKXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNC 581
+K + C GH +DC + YRC TGH+A +++ E +CY + GH+ R C
Sbjct: 117 QKCYSCGEFGHIQKDCTKVK--CYRCGETGHVAINCSKT-SEVNCYRCGESGHLAREC 171
Score = 48.4 bits (110), Expect = 4e-05
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +3
Query: 402 QXEKXFKCNXTGHFXRDCK----EEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHI 569
Q + + C GH +DCK E Y C GH+A + DE CY+ + GHI
Sbjct: 70 QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD-CDHADEQKCYSCGEFGHI 128
Query: 570 XRNC 581
++C
Sbjct: 129 QKDC 132
Score = 39.9 bits (89), Expect = 0.012
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 468 DXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCPE 587
D YRC +GH+A + D +CYN + GHI ++C E
Sbjct: 52 DICYRCGESGHLAKDCDLQED--ACYNCGRGGHIAKDCKE 89
Score = 30.7 bits (66), Expect = 7.5
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 302 MSSSXXYKXNRTGHFAXXC-TQGGRG 376
MSS+ +K R+GH+A C T GGRG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRG 26
>M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein.
Length = 177
Score = 53.2 bits (122), Expect = 1e-06
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 417 FKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQ--SPDEPSCYNXNKXGHIXRNC 581
++C +GH +DC + D Y C GHIA + + E CYN K GH+ R+C
Sbjct: 55 YRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 49.2 bits (112), Expect = 2e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 408 EKXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNC 581
+K + C GH +DC + YRC TGH+A +++ E +CY + GH+ R C
Sbjct: 117 QKCYSCGEFGHIQKDCTKVK--CYRCGETGHVAINCSKT-SEVNCYRCGESGHLAREC 171
Score = 48.4 bits (110), Expect = 4e-05
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +3
Query: 402 QXEKXFKCNXTGHFXRDCK----EEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHI 569
Q + + C GH +DCK E Y C GH+A + DE CY+ + GHI
Sbjct: 70 QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD-CDHADEQKCYSCGEFGHI 128
Query: 570 XRNC 581
++C
Sbjct: 129 QKDC 132
Score = 39.9 bits (89), Expect = 0.012
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 468 DXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCPE 587
D YRC +GH+A + D +CYN + GHI ++C E
Sbjct: 52 DICYRCGESGHLAKDCDLQED--ACYNCGRGGHIAKDCKE 89
Score = 30.7 bits (66), Expect = 7.5
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 302 MSSSXXYKXNRTGHFAXXC-TQGGRG 376
MSS+ +K R+GH+A C T GGRG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRG 26
>BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger,
nucleic acid binding protein protein.
Length = 177
Score = 53.2 bits (122), Expect = 1e-06
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 417 FKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQ--SPDEPSCYNXNKXGHIXRNC 581
++C +GH +DC + D Y C GHIA + + E CYN K GH+ R+C
Sbjct: 55 YRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 49.2 bits (112), Expect = 2e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 408 EKXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNC 581
+K + C GH +DC + YRC TGH+A +++ E +CY + GH+ R C
Sbjct: 117 QKCYSCGEFGHIQKDCTKVK--CYRCGETGHVAINCSKT-SEVNCYRCGESGHLAREC 171
Score = 48.4 bits (110), Expect = 4e-05
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +3
Query: 402 QXEKXFKCNXTGHFXRDCK----EEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHI 569
Q + + C GH +DCK E Y C GH+A + DE CY+ + GHI
Sbjct: 70 QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD-CDHADEQKCYSCGEFGHI 128
Query: 570 XRNC 581
++C
Sbjct: 129 QKDC 132
Score = 39.9 bits (89), Expect = 0.012
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 468 DXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCPE 587
D YRC +GH+A + D +CYN + GHI ++C E
Sbjct: 52 DICYRCGESGHLAKDCDLQED--ACYNCGRGGHIAKDCKE 89
Score = 30.7 bits (66), Expect = 7.5
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 302 MSSSXXYKXNRTGHFAXXC-TQGGRG 376
MSS+ +K R+GH+A C T GGRG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRG 26
>BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 53.2 bits (122), Expect = 1e-06
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 417 FKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQ--SPDEPSCYNXNKXGHIXRNC 581
++C +GH +DC + D Y C GHIA + + E CYN K GH+ R+C
Sbjct: 48 YRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 104
Score = 49.2 bits (112), Expect = 2e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 408 EKXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNC 581
+K + C GH +DC + YRC TGH+A +++ E +CY + GH+ R C
Sbjct: 110 QKCYSCGEFGHIQKDCTKVK--CYRCGETGHVAINCSKT-SEVNCYRCGESGHLAREC 164
Score = 48.4 bits (110), Expect = 4e-05
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +3
Query: 402 QXEKXFKCNXTGHFXRDCK----EEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHI 569
Q + + C GH +DCK E Y C GH+A + DE CY+ + GHI
Sbjct: 63 QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD-CDHADEQKCYSCGEFGHI 121
Query: 570 XRNC 581
++C
Sbjct: 122 QKDC 125
Score = 39.9 bits (89), Expect = 0.012
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 468 DXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCPE 587
D YRC +GH+A + D +CYN + GHI ++C E
Sbjct: 45 DICYRCGESGHLAKDCDLQED--ACYNCGRGGHIAKDCKE 82
Score = 30.7 bits (66), Expect = 7.5
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 302 MSSSXXYKXNRTGHFAXXC-TQGGRG 376
MSS+ +K R+GH+A C T GGRG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRG 26
>BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 53.2 bits (122), Expect = 1e-06
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 417 FKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQ--SPDEPSCYNXNKXGHIXRNC 581
++C +GH +DC + D Y C GHIA + + E CYN K GH+ R+C
Sbjct: 48 YRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 104
Score = 49.2 bits (112), Expect = 2e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 408 EKXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNC 581
+K + C GH +DC + YRC TGH+A +++ E +CY + GH+ R C
Sbjct: 110 QKCYSCGEFGHIQKDCTKVK--CYRCGETGHVAINCSKT-SEVNCYRCGESGHLAREC 164
Score = 48.4 bits (110), Expect = 4e-05
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +3
Query: 402 QXEKXFKCNXTGHFXRDCK----EEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHI 569
Q + + C GH +DCK E Y C GH+A + DE CY+ + GHI
Sbjct: 63 QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD-CDHADEQKCYSCGEFGHI 121
Query: 570 XRNC 581
++C
Sbjct: 122 QKDC 125
Score = 39.9 bits (89), Expect = 0.012
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 468 DXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCPE 587
D YRC +GH+A + D +CYN + GHI ++C E
Sbjct: 45 DICYRCGESGHLAKDCDLQED--ACYNCGRGGHIAKDCKE 82
Score = 30.7 bits (66), Expect = 7.5
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 302 MSSSXXYKXNRTGHFAXXC-TQGGRG 376
MSS+ +K R+GH+A C T GGRG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRG 26
>AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9
protein.
Length = 177
Score = 53.2 bits (122), Expect = 1e-06
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 417 FKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQ--SPDEPSCYNXNKXGHIXRNC 581
++C +GH +DC + D Y C GHIA + + E CYN K GH+ R+C
Sbjct: 55 YRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 49.2 bits (112), Expect = 2e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 408 EKXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNC 581
+K + C GH +DC + YRC TGH+A +++ E +CY + GH+ R C
Sbjct: 117 QKCYSCGEFGHIQKDCTKVK--CYRCGETGHVAINCSKT-SEVNCYRCGESGHLAREC 171
Score = 48.4 bits (110), Expect = 4e-05
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +3
Query: 402 QXEKXFKCNXTGHFXRDCK----EEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHI 569
Q + + C GH +DCK E Y C GH+A + DE CY+ + GHI
Sbjct: 70 QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD-CDHADEQKCYSCGEFGHI 128
Query: 570 XRNC 581
++C
Sbjct: 129 QKDC 132
Score = 39.9 bits (89), Expect = 0.012
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 468 DXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCPE 587
D YRC +GH+A + D +CYN + GHI ++C E
Sbjct: 52 DICYRCGESGHLAKDCDLQED--ACYNCGRGGHIAKDCKE 89
Score = 30.7 bits (66), Expect = 7.5
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 302 MSSSXXYKXNRTGHFAXXC-TQGGRG 376
MSS+ +K R+GH+A C T GGRG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRG 26
>DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid
binding protein beta variant 2 protein.
Length = 172
Score = 50.4 bits (115), Expect = 9e-06
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +3
Query: 417 FKCNXTGHFXRDC--KEEXDXXYRCNXTGHIAXEXAQ--SPDEPSCYNXNKXGHIXRNC 581
++C +GH +DC +E+ + Y C GHIA + + E CYN K GH+ R+C
Sbjct: 48 YRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106
Score = 50.4 bits (115), Expect = 9e-06
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 375 VSRDSXFNXQXEKXFKCNXTGHFXRDCK----EEXDXXYRCNXTGHIAXEXAQSPDEPSC 542
+++D E + C GH +DCK E Y C GH+A + DE C
Sbjct: 56 LAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD-CDHADEQKC 114
Query: 543 YNXNKXGHIXRNC 581
Y+ + GHI ++C
Sbjct: 115 YSCGEFGHIQKDC 127
Score = 49.2 bits (112), Expect = 2e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 408 EKXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNC 581
+K + C GH +DC + YRC TGH+A +++ E +CY + GH+ R C
Sbjct: 112 QKCYSCGEFGHIQKDCTKVK--CYRCGETGHVAINCSKT-SEVNCYRCGESGHLAREC 166
Score = 44.0 bits (99), Expect = 8e-04
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 468 DXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCPE 587
D YRC +GH+A + D +CYN + GHI ++C E
Sbjct: 45 DICYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKE 84
Score = 30.7 bits (66), Expect = 7.5
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 302 MSSSXXYKXNRTGHFAXXC-TQGGRG 376
MSS+ +K R+GH+A C T GGRG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRG 26
>DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid
binding protein beta variant 1 protein.
Length = 171
Score = 50.4 bits (115), Expect = 9e-06
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 417 FKCNXTGHFXRDCK-EEXDXXYRCNXTGHIAXEXAQSPDEPS--CYNXNKXGHIXRNC 581
++C +GH +DC +E + Y C GHIA + + E CYN K GH+ R+C
Sbjct: 48 YRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 105
Score = 49.2 bits (112), Expect = 2e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 408 EKXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNC 581
+K + C GH +DC + YRC TGH+A +++ E +CY + GH+ R C
Sbjct: 111 QKCYSCGEFGHIQKDCTKVK--CYRCGETGHVAINCSKT-SEVNCYRCGESGHLAREC 165
Score = 48.4 bits (110), Expect = 4e-05
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +3
Query: 402 QXEKXFKCNXTGHFXRDCK----EEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHI 569
+ E + C GH +DCK E Y C GH+A + DE CY+ + GHI
Sbjct: 64 EDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD-CDHADEQKCYSCGEFGHI 122
Query: 570 XRNC 581
++C
Sbjct: 123 QKDC 126
Score = 42.7 bits (96), Expect = 0.002
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 468 DXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCPE 587
D YRC +GH+A + DE +CYN + GHI ++C E
Sbjct: 45 DICYRCGESGHLAKDCDLQEDE-ACYNCGRGGHIAKDCKE 83
Score = 30.7 bits (66), Expect = 7.5
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 302 MSSSXXYKXNRTGHFAXXC-TQGGRG 376
MSS+ +K R+GH+A C T GGRG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRG 26
>DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid
binding protein alpha variant 1 protein.
Length = 178
Score = 50.4 bits (115), Expect = 9e-06
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 417 FKCNXTGHFXRDCK-EEXDXXYRCNXTGHIAXEXAQSPDEPS--CYNXNKXGHIXRNC 581
++C +GH +DC +E + Y C GHIA + + E CYN K GH+ R+C
Sbjct: 55 YRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
Score = 49.2 bits (112), Expect = 2e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 408 EKXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNC 581
+K + C GH +DC + YRC TGH+A +++ E +CY + GH+ R C
Sbjct: 118 QKCYSCGEFGHIQKDCTKVK--CYRCGETGHVAINCSKT-SEVNCYRCGESGHLAREC 172
Score = 48.4 bits (110), Expect = 4e-05
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +3
Query: 402 QXEKXFKCNXTGHFXRDCK----EEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHI 569
+ E + C GH +DCK E Y C GH+A + DE CY+ + GHI
Sbjct: 71 EDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD-CDHADEQKCYSCGEFGHI 129
Query: 570 XRNC 581
++C
Sbjct: 130 QKDC 133
Score = 42.7 bits (96), Expect = 0.002
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 468 DXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCPE 587
D YRC +GH+A + DE +CYN + GHI ++C E
Sbjct: 52 DICYRCGESGHLAKDCDLQEDE-ACYNCGRGGHIAKDCKE 90
Score = 30.7 bits (66), Expect = 7.5
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 302 MSSSXXYKXNRTGHFAXXC-TQGGRG 376
MSS+ +K R+GH+A C T GGRG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRG 26
>BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (a
cellular retroviral nucleic acid binding protein)
protein.
Length = 178
Score = 50.4 bits (115), Expect = 9e-06
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 417 FKCNXTGHFXRDCK-EEXDXXYRCNXTGHIAXEXAQSPDEPS--CYNXNKXGHIXRNC 581
++C +GH +DC +E + Y C GHIA + + E CYN K GH+ R+C
Sbjct: 55 YRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
Score = 49.2 bits (112), Expect = 2e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 408 EKXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNC 581
+K + C GH +DC + YRC TGH+A +++ E +CY + GH+ R C
Sbjct: 118 QKCYSCGEFGHIQKDCTKVK--CYRCGETGHVAINCSKT-SEVNCYRCGESGHLAREC 172
Score = 48.4 bits (110), Expect = 4e-05
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +3
Query: 402 QXEKXFKCNXTGHFXRDCK----EEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHI 569
+ E + C GH +DCK E Y C GH+A + DE CY+ + GHI
Sbjct: 71 EDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD-CDHADEQKCYSCGEFGHI 129
Query: 570 XRNC 581
++C
Sbjct: 130 QKDC 133
Score = 42.7 bits (96), Expect = 0.002
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 468 DXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCPE 587
D YRC +GH+A + DE +CYN + GHI ++C E
Sbjct: 52 DICYRCGESGHLAKDCDLQEDE-ACYNCGRGGHIAKDCKE 90
Score = 30.7 bits (66), Expect = 7.5
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 302 MSSSXXYKXNRTGHFAXXC-TQGGRG 376
MSS+ +K R+GH+A C T GGRG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRG 26
>BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domain
containing 13 protein.
Length = 166
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +3
Query: 417 FKCNXTGHFXRDCK----EEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
+ C +GH +DCK E Y C GH+A + + ++ CY+ K GHI ++C
Sbjct: 68 YNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQ-KCYSCGKLGHIQKDCA 126
Query: 585 E 587
+
Sbjct: 127 Q 127
Score = 44.0 bits (99), Expect = 8e-04
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 417 FKCNXTGHFXRDC-KEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCPEGG 593
+ C GH RDC +++ Y C GHI + AQ CY + GH+ NC +
Sbjct: 92 YTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQV----KCYRCGEIGHVAINCSKAR 147
Query: 594 XG 599
G
Sbjct: 148 PG 149
Score = 37.1 bits (82), Expect = 0.087
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 423 CNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDE--PSCYNXNKXGHIXRNC 581
C +G ++C + Y C +GHIA + E CY + GH+ R+C
Sbjct: 50 CGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDC 104
Score = 32.7 bits (71), Expect = 1.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 408 EKXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQS 524
+K + C GH +DC + YRC GH+A +++
Sbjct: 110 QKCYSCGKLGHIQKDCAQV--KCYRCGEIGHVAINCSKA 146
>AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid
binding protein protein.
Length = 54
Score = 43.2 bits (97), Expect = 0.001
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 435 GHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNC 581
GH +DC + YRC TGH+A +++ E +CY + GH+ R C
Sbjct: 3 GHIQKDCTKVK--CYRCGETGHVAINCSKT-SEVNCYRCGESGHLAREC 48
Score = 33.9 bits (74), Expect = 0.81
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 411 KXFKCNXTGHFXRDCKEEXD-XXYRCNXTGHIAXE 512
K ++C TGH +C + + YRC +GH+A E
Sbjct: 13 KCYRCGETGHVAINCSKTSEVNCYRCGESGHLARE 47
>Z95329-1|CAI21661.2| 250|Homo sapiens lin-28 homolog B (C.
elegans) protein.
Length = 250
Score = 31.9 bits (69), Expect = 3.3
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 456 KEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
K + D Y C H A E + P C+ H+ NCP
Sbjct: 123 KPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCP 165
>DQ127228-1|AAZ38897.1| 250|Homo sapiens LIN28B protein.
Length = 250
Score = 31.9 bits (69), Expect = 3.3
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 456 KEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
K + D Y C H A E + P C+ H+ NCP
Sbjct: 123 KPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCP 165
>BC150538-1|AAI50539.1| 227|Homo sapiens Unknown (protein for
IMAGE:40127315) protein.
Length = 227
Score = 31.9 bits (69), Expect = 3.3
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 456 KEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
K + D Y C H A E + P C+ H+ NCP
Sbjct: 100 KPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCP 142
>BC150537-1|AAI50538.1| 227|Homo sapiens Unknown (protein for
IMAGE:40127314) protein.
Length = 227
Score = 31.9 bits (69), Expect = 3.3
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 456 KEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
K + D Y C H A E + P C+ H+ NCP
Sbjct: 100 KPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCP 142
>BC141960-1|AAI41961.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 31.9 bits (69), Expect = 3.3
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 456 KEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
K + D Y C H A E + P C+ H+ NCP
Sbjct: 100 KPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCP 142
>BC127713-1|AAI27714.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 31.9 bits (69), Expect = 3.3
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 456 KEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
K + D Y C H A E + P C+ H+ NCP
Sbjct: 100 KPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCP 142
>BC127712-1|AAI27713.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 31.9 bits (69), Expect = 3.3
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 456 KEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
K + D Y C H A E + P C+ H+ NCP
Sbjct: 100 KPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCP 142
>AL135911-2|CAI20969.2| 250|Homo sapiens lin-28 homolog B (C.
elegans) protein.
Length = 250
Score = 31.9 bits (69), Expect = 3.3
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 456 KEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
K + D Y C H A E + P C+ H+ NCP
Sbjct: 123 KPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCP 165
>AK131411-1|BAD18558.1| 250|Homo sapiens protein ( Homo sapiens
cDNA FLJ16517 fis, clone NT2RI3007167. ).
Length = 250
Score = 31.9 bits (69), Expect = 3.3
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 456 KEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
K + D Y C H A E + P C+ H+ NCP
Sbjct: 123 KPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCP 165
>BC005990-1|AAH05990.1| 405|Homo sapiens Unknown (protein for
IMAGE:4046616) protein.
Length = 405
Score = 30.7 bits (66), Expect = 7.5
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Frame = +3
Query: 372 VVSRDSXFNXQXEKXF-KCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPS--- 539
++ R F +K +C+ GH+ C E + G + ++P PS
Sbjct: 291 MLDRSCLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPG--PPKKPKTPSRPSALA 348
Query: 540 -CYNXNKXGHIXRNCPE 587
CY+ + GH CPE
Sbjct: 349 YCYHCAQKGHYGHECPE 365
>BC032736-1|AAH32736.1| 271|Homo sapiens ZCCHC9 protein protein.
Length = 271
Score = 30.3 bits (65), Expect = 10.0
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 14/76 (18%)
Frame = +3
Query: 417 FKCNXTGHFXRDCK---EEXDXX----YRCNXTGHIAXEXAQSPDEP-------SCYNXN 554
F C GH DC E D YRC T H + D C+
Sbjct: 131 FHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCG 190
Query: 555 KXGHIXRNCPEGGXGV 602
+ GH+ R+CP+ G+
Sbjct: 191 EMGHLSRSCPDNPKGL 206
>BC014841-1|AAH14841.1| 274|Homo sapiens ZCCHC9 protein protein.
Length = 274
Score = 30.3 bits (65), Expect = 10.0
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 14/76 (18%)
Frame = +3
Query: 417 FKCNXTGHFXRDCK---EEXDXX----YRCNXTGHIAXEXAQSPDEP-------SCYNXN 554
F C GH DC E D YRC T H + D C+
Sbjct: 131 FHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCG 190
Query: 555 KXGHIXRNCPEGGXGV 602
+ GH+ R+CP+ G+
Sbjct: 191 EMGHLSRSCPDNPKGL 206
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,282,770
Number of Sequences: 237096
Number of extensions: 596130
Number of successful extensions: 1338
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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