Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_I24
(900 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 40 0.002
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 33 0.28
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 33 0.28
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 33 0.28
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 32 0.49
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 32 0.49
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 31 1.5
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 29 3.4
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 29 3.4
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 29 3.4
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 477 YRCNXTGHIAXEXAQS--PDEPSCYNXNKXGHIXRNCP 584
Y C +GHI+ E +S +E CY + GHI R+CP
Sbjct: 110 YNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDCP 147
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 417 FKCNXTGHFXRDCKE-EXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCPEGG 593
+KC GH R+C E D R G +CYN + GH R+CP+GG
Sbjct: 7 YKCQQPGHISRNCPNGESDGGRRGGGGGS------------TCYNCQETGHFSRDCPKGG 54
Query: 594 XG 599
G
Sbjct: 55 SG 56
Score = 36.3 bits (80), Expect = 0.030
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = +3
Query: 417 FKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCPEGG 593
+ C GH+ RDC G +S CYN + GHI R C E G
Sbjct: 70 YNCGGRGHYSRDCPSARSEGGSGGYGGR--GGEGRSFGGQKCYNCGRSGHISRECTESG 126
Score = 35.1 bits (77), Expect = 0.069
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +3
Query: 417 FKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP---- 584
+ C TGHF RDC + G + SCYN GH R+CP
Sbjct: 38 YNCQETGHFSRDCPKG----------GSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSARS 87
Query: 585 EGGXG 599
EGG G
Sbjct: 88 EGGSG 92
Score = 34.7 bits (76), Expect = 0.091
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +3
Query: 408 EKXFKCNXTGHFXRDCKE----EXDXXYRCNXTGHIAXE 512
+K + C +GH R+C E E Y+C TGHI+ +
Sbjct: 107 QKCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRD 145
Score = 30.7 bits (66), Expect = 1.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 537 SCYNXNKXGHIXRNCPEG 590
+CY + GHI RNCP G
Sbjct: 5 NCYKCQQPGHISRNCPNG 22
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 33.1 bits (72), Expect = 0.28
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 432 TGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPS---CYNXNKXGHIXRNCPE 587
+G +D E + + C GH + + + E CYN + GH R+CPE
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 33.1 bits (72), Expect = 0.28
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 432 TGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPS---CYNXNKXGHIXRNCPE 587
+G +D E + + C GH + + + E CYN + GH R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 411 KXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEP 536
K F C GH +C E + C GH + E +P +P
Sbjct: 454 KCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNE-CPNPAKP 494
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 477 YRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
+ C GH + E + P C+N + GH CP
Sbjct: 456 FNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 489
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 33.1 bits (72), Expect = 0.28
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 432 TGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPS---CYNXNKXGHIXRNCPE 587
+G +D E + + C GH + + + E CYN + GH R+CPE
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 33.1 bits (72), Expect = 0.28
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 432 TGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPS---CYNXNKXGHIXRNCPE 587
+G +D E + + C GH + + + E CYN + GH R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 411 KXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEP 536
K F C GH +C E + C GH + E +P +P
Sbjct: 454 KCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNE-CPNPAKP 494
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 477 YRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
+ C GH + E + P C+N + GH CP
Sbjct: 456 FNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 489
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 33.1 bits (72), Expect = 0.28
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 432 TGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPS---CYNXNKXGHIXRNCPE 587
+G +D E + + C GH + + + E CYN + GH R+CPE
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 33.1 bits (72), Expect = 0.28
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 432 TGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEPS---CYNXNKXGHIXRNCPE 587
+G +D E + + C GH + + + E CYN + GH R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 411 KXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEP 536
K F C GH +C E + C GH + E +P +P
Sbjct: 454 KCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNE-CPNPAKP 494
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 477 YRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
+ C GH + E + P C+N + GH CP
Sbjct: 456 FNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 489
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 32.3 bits (70), Expect = 0.49
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Frame = +3
Query: 423 CNXTGHFXRDCKE---EXDXXYRCNXTGHIAXEXAQSPDEP--SCYNXNKXGHIXRNC 581
C GHF DC + C GH A + Q P P C N + GH ++C
Sbjct: 598 CEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQ-PKVPRGPCRNCGQEGHFAKDC 654
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 32.3 bits (70), Expect = 0.49
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Frame = +3
Query: 423 CNXTGHFXRDCKE---EXDXXYRCNXTGHIAXEXAQSPDEP--SCYNXNKXGHIXRNC 581
C GHF DC + C GH A + Q P P C N + GH ++C
Sbjct: 598 CEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQ-PKVPRGPCRNCGQEGHFAKDC 654
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 30.7 bits (66), Expect = 1.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 537 SCYNXNKXGHIXRNCPEG 590
+CY + GHI RNCP G
Sbjct: 5 NCYKCQQPGHISRNCPNG 22
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 411 KXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEP 536
K F C GH +C E + C GH + E +P +P
Sbjct: 243 KCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNE-CPNPAKP 283
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = +3
Query: 459 EEXDXXYRCNXTGHIAXEXAQSPDEPS---CYNXNKXGHIXRNCPE 587
E + + C GH + + + E CYN + GH R C E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 477 YRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
+ C GH + E + P C+N + GH CP
Sbjct: 245 FNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 411 KXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEP 536
K F C GH +C E + C GH + E +P +P
Sbjct: 243 KCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNE-CPNPAKP 283
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = +3
Query: 459 EEXDXXYRCNXTGHIAXEXAQSPDEPS---CYNXNKXGHIXRNCPE 587
E + + C GH + + + E CYN + GH R C E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 477 YRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
+ C GH + E + P C+N + GH CP
Sbjct: 245 FNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 411 KXFKCNXTGHFXRDCKEEXDXXYRCNXTGHIAXEXAQSPDEP 536
K F C GH +C E + C GH + E +P +P
Sbjct: 243 KCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNE-CPNPAKP 283
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = +3
Query: 459 EEXDXXYRCNXTGHIAXEXAQSPDEPS---CYNXNKXGHIXRNCPE 587
E + + C GH + + + E CYN + GH R C E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 477 YRCNXTGHIAXEXAQSPDEPSCYNXNKXGHIXRNCP 584
+ C GH + E + P C+N + GH CP
Sbjct: 245 FNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,422,212
Number of Sequences: 27780
Number of extensions: 84829
Number of successful extensions: 222
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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