Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I22
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        32   0.091
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   2.0  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    27   2.6  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    27   2.6  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    26   7.9  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 32.3 bits (70), Expect = 0.091
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +1

Query: 457 NATALREKLQAAVQNTVQESHKLAKKVSSNVQETXEKLXPKIKXAYDD 600
           N ++LRE L   VQ  V+E H   + +  NV+ET  ++  +I+   DD
Sbjct: 751 NVSSLREDL--GVQINVEEGHIRIQGIKKNVEETAARIKSQIEALIDD 796


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 288 KDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTA 419
           KDG+++   +LN FAK L  +    + +A +   +    IE+++
Sbjct: 111 KDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSS 154


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 267 QDFSKAWKDGSESVLQQLNAFAKSLQGALGD-ANGKAKEALEQSR-QNIE 410
           +D + A+ +   SVLQ+L+   + +QG LG   N     AL Q + QN++
Sbjct: 79  EDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQ 128


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 399 ASTVPKPPWPCRSRLRALPG 340
           AST+ K PWP  + L  +PG
Sbjct: 38  ASTLEKEPWPASTALLVMPG 57


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 443 RVXLAELLGRALDVLPRLFQSLLGLAVRVSERSLETLGEGVELL 312
           RV L +LL   L+V+P+ +   + L +     S++T  + VELL
Sbjct: 282 RVKLKQLLSSKLEVIPKNYIQKVVLNILFLLLSIDTHSDVVELL 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,508
Number of Sequences: 5004
Number of extensions: 30851
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)