Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I19
         (932 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0519 - 19945456-19945653,19947110-19947112                       48   8e-06
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    46   6e-05
04_03_0830 - 20125827-20125913,20126262-20126357,20126974-201270...    29   4.0  

>12_02_0519 - 19945456-19945653,19947110-19947112
          Length = 66

 Score = 48.4 bits (110), Expect = 8e-06
 Identities = 22/37 (59%), Positives = 26/37 (70%)
 Frame = +2

Query: 188 KNITMRGNVPKTTKEKEDQYPVAPXVLDLFIFXXCGS 298
           KNIT RG+VP+TT +K + YPV P VL  FIF   GS
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGPMVLGFFIFVVIGS 53


>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 45.6 bits (103), Expect = 6e-05
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +2

Query: 188 KNITMRGNVPKTTKEKEDQYPVAPXVLDLFIF 283
           KNIT RG+VP+TT +K + YPV P VL  FIF
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGPLVLGFFIF 48


>04_03_0830 -
           20125827-20125913,20126262-20126357,20126974-20127053,
           20127124-20127220,20127457-20127544,20128491-20128576,
           20129358-20130530
          Length = 568

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -2

Query: 304 HSRATXXEDEEIKDXGCHRILVFFFLGSFGYIPPHCDVFXWRS 176
           HS A   +D+E +    HRI    F G  G  PP      W S
Sbjct: 284 HSAAGNGDDDEYESTQQHRIKCAGFFGGLGAAPPPTSSSYWLS 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,112,005
Number of Sequences: 37544
Number of extensions: 236674
Number of successful extensions: 1533
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)