Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I18
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...   146   5e-36
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...   124   1e-29
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    27   2.7  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   6.2  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    26   8.2  

>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score =  146 bits (353), Expect = 5e-36
 Identities = 65/108 (60%), Positives = 78/108 (72%)
 Frame = +3

Query: 198 YIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEISL 377
           Y   E G+  T DY+V+ +  G PIS  HDIPL+A+  + ++NMVVE+PRWT AK+EI+ 
Sbjct: 4   YTTREVGALNTLDYQVYVEKNGTPISSWHDIPLYANAEKTILNMVVEIPRWTQAKLEITK 63

Query: 378 GEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTXENPNHVDPE 521
              LNPIKQD KKG LRFV N FPH GYIWNYGA PQT E+PN V PE
Sbjct: 64  EATLNPIKQDTKKGKLRFVRNCFPHHGYIWNYGAFPQTYEDPNVVHPE 111



 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 28/53 (52%), Positives = 35/53 (66%)
 Frame = +1

Query: 523 TGARGDNDPVDVIEIGERVASRGDVYPVKILGTLXLIDEXXTDWXLIXIDSRD 681
           T A+GD+DP+DV EIGE     G V  VK+LG + L+DE  TDW +I ID  D
Sbjct: 112 TKAKGDSDPLDVCEIGEARGYTGQVKQVKVLGVMALLDEGETDWKVIVIDVND 164


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score =  124 bits (300), Expect = 1e-29
 Identities = 59/115 (51%), Positives = 75/115 (65%)
 Frame = +3

Query: 171 ATLKTQVRMYIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRW 350
           A+L   +  +  +  G   TPD+RV+      PIS  HD+PL +DK     NMV E+PRW
Sbjct: 2   ASLAKNILQFRSKITGKLNTPDFRVYCYKNNKPISFFHDVPLTSDKDT--FNMVTEIPRW 59

Query: 351 TNAKMEISLGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTXENPNHVD 515
           T AK EISL    +PIKQD+K G LR+V N FP+ G+IWNYGALPQT E+PN +D
Sbjct: 60  TQAKCEISLTSPFHPIKQDLKNGKLRYVANSFPYHGFIWNYGALPQTWEDPNVID 114



 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 25/53 (47%), Positives = 33/53 (62%)
 Frame = +1

Query: 523 TGARGDNDPVDVIEIGERVASRGDVYPVKILGTLXLIDEXXTDWXLIXIDSRD 681
           T  +GD DP+DV EIG  +   G +  VK+LG L LID+  TDW ++ ID  D
Sbjct: 117 TKMKGDGDPLDVCEIGGSIGYIGQIKQVKVLGALGLIDQGETDWKILAIDIND 169


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 108 IARRLCAVKEPTRVTCSINSTATLKTQVRMYIVEERGSPYTPD 236
           +A R C   +  R  C I   +T K+   +YI  E   P T +
Sbjct: 64  LADRACETMKTLRHPCIIKYLSTYKSSTHLYIATETVRPVTTE 106


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 213 RGSPYTPDY--RVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEISLGEA 386
           RG P T +    V+ K+  GP  P     +     + ++++V+E  +WTNA   + +  +
Sbjct: 301 RGEPVTLENGKTVYPKEVIGPSIPGSSFFIIHCPNELVIDLVIENHKWTNAPKPVCVIHS 360

Query: 387 LNP 395
           + P
Sbjct: 361 VTP 363


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 155 TSYTCRFFNSAQSSCYRPANRNSC 84
           TSY C+F NS  S  Y+ +  N C
Sbjct: 254 TSYYCKFLNSWFSGDYQQSVENLC 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,406
Number of Sequences: 5004
Number of extensions: 46104
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)