Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I18
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68882-7|CAD89727.1|  292|Caenorhabditis elegans Hypothetical pr...   159   2e-39
Z68882-6|CAA93107.3|  406|Caenorhabditis elegans Hypothetical pr...   159   2e-39
Z68882-5|CAD89726.1|  407|Caenorhabditis elegans Hypothetical pr...   159   2e-39
Z68882-4|CAD89728.1|  338|Caenorhabditis elegans Hypothetical pr...   159   2e-39
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    29   4.4  
AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z68882-7|CAD89727.1|  292|Caenorhabditis elegans Hypothetical
           protein C47E12.4d protein.
          Length = 292

 Score =  159 bits (387), Expect = 2e-39
 Identities = 69/109 (63%), Positives = 87/109 (79%)
 Frame = +3

Query: 195 MYIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEIS 374
           +Y   ERGS Y+ DYRV+ K   G +SP HDIPL+A+K +R+ NM+VE+PRWTNAKME++
Sbjct: 10  VYEAVERGSLYSLDYRVYIKGPQGIVSPWHDIPLFANKDKRVYNMIVEIPRWTNAKMEMA 69

Query: 375 LGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTXENPNHVDPE 521
             E  +PIKQD KKG  RFV+N+FPH+GYIWNYGALPQT E+PNHV P+
Sbjct: 70  TKEPFSPIKQDEKKGVARFVHNIFPHKGYIWNYGALPQTWEDPNHVVPD 118



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 35/54 (64%), Positives = 42/54 (77%)
 Frame = +1

Query: 520 NTGARGDNDPVDVIEIGERVASRGDVYPVKILGTLXLIDEXXTDWXLIXIDSRD 681
           +TGA+GDNDP+DVIE+G +VA RG V  VK+LGTL LIDE  TDW L+ ID  D
Sbjct: 118 DTGAKGDNDPIDVIEVGSKVAGRGAVLQVKVLGTLALIDEGETDWKLVAIDVND 171


>Z68882-6|CAA93107.3|  406|Caenorhabditis elegans Hypothetical
           protein C47E12.4c protein.
          Length = 406

 Score =  159 bits (387), Expect = 2e-39
 Identities = 69/109 (63%), Positives = 87/109 (79%)
 Frame = +3

Query: 195 MYIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEIS 374
           +Y   ERGS Y+ DYRV+ K   G +SP HDIPL+A+K +R+ NM+VE+PRWTNAKME++
Sbjct: 124 VYEAVERGSLYSLDYRVYIKGPQGIVSPWHDIPLFANKDKRVYNMIVEIPRWTNAKMEMA 183

Query: 375 LGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTXENPNHVDPE 521
             E  +PIKQD KKG  RFV+N+FPH+GYIWNYGALPQT E+PNHV P+
Sbjct: 184 TKEPFSPIKQDEKKGVARFVHNIFPHKGYIWNYGALPQTWEDPNHVVPD 232



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 35/54 (64%), Positives = 42/54 (77%)
 Frame = +1

Query: 520 NTGARGDNDPVDVIEIGERVASRGDVYPVKILGTLXLIDEXXTDWXLIXIDSRD 681
           +TGA+GDNDP+DVIE+G +VA RG V  VK+LGTL LIDE  TDW L+ ID  D
Sbjct: 232 DTGAKGDNDPIDVIEVGSKVAGRGAVLQVKVLGTLALIDEGETDWKLVAIDVND 285


>Z68882-5|CAD89726.1|  407|Caenorhabditis elegans Hypothetical
           protein C47E12.4b protein.
          Length = 407

 Score =  159 bits (387), Expect = 2e-39
 Identities = 69/109 (63%), Positives = 87/109 (79%)
 Frame = +3

Query: 195 MYIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEIS 374
           +Y   ERGS Y+ DYRV+ K   G +SP HDIPL+A+K +R+ NM+VE+PRWTNAKME++
Sbjct: 125 VYEAVERGSLYSLDYRVYIKGPQGIVSPWHDIPLFANKDKRVYNMIVEIPRWTNAKMEMA 184

Query: 375 LGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTXENPNHVDPE 521
             E  +PIKQD KKG  RFV+N+FPH+GYIWNYGALPQT E+PNHV P+
Sbjct: 185 TKEPFSPIKQDEKKGVARFVHNIFPHKGYIWNYGALPQTWEDPNHVVPD 233



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 35/54 (64%), Positives = 42/54 (77%)
 Frame = +1

Query: 520 NTGARGDNDPVDVIEIGERVASRGDVYPVKILGTLXLIDEXXTDWXLIXIDSRD 681
           +TGA+GDNDP+DVIE+G +VA RG V  VK+LGTL LIDE  TDW L+ ID  D
Sbjct: 233 DTGAKGDNDPIDVIEVGSKVAGRGAVLQVKVLGTLALIDEGETDWKLVAIDVND 286


>Z68882-4|CAD89728.1|  338|Caenorhabditis elegans Hypothetical
           protein C47E12.4a protein.
          Length = 338

 Score =  159 bits (387), Expect = 2e-39
 Identities = 69/109 (63%), Positives = 87/109 (79%)
 Frame = +3

Query: 195 MYIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEIS 374
           +Y   ERGS Y+ DYRV+ K   G +SP HDIPL+A+K +R+ NM+VE+PRWTNAKME++
Sbjct: 56  VYEAVERGSLYSLDYRVYIKGPQGIVSPWHDIPLFANKDKRVYNMIVEIPRWTNAKMEMA 115

Query: 375 LGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTXENPNHVDPE 521
             E  +PIKQD KKG  RFV+N+FPH+GYIWNYGALPQT E+PNHV P+
Sbjct: 116 TKEPFSPIKQDEKKGVARFVHNIFPHKGYIWNYGALPQTWEDPNHVVPD 164



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 35/54 (64%), Positives = 42/54 (77%)
 Frame = +1

Query: 520 NTGARGDNDPVDVIEIGERVASRGDVYPVKILGTLXLIDEXXTDWXLIXIDSRD 681
           +TGA+GDNDP+DVIE+G +VA RG V  VK+LGTL LIDE  TDW L+ ID  D
Sbjct: 164 DTGAKGDNDPIDVIEVGSKVAGRGAVLQVKVLGTLALIDEGETDWKLVAIDVND 217


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +2

Query: 260 RRSYIAHARHSTMGRQSSTPRQHGSRST*MDQCENG--DQPRGGPQSYQAGRKERQPSVR 433
           RRS     R S M R   +P  H  RS  M    +G  + P GGP  ++   + R P+ R
Sbjct: 227 RRSPPPRDRMSPMRRGGRSPPPHRRRSP-MGGRGSGANNMPLGGPNRFRRASRSRSPAGR 285

Query: 434 EQR 442
             R
Sbjct: 286 RSR 288


>AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical
           protein F13C5.2 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 359 ENGDQPRGGPQSYQAGRKERQPSVREQRLPSSRLHLELR 475
           +N D   GGP + + GRK++  S  E    S  LH EL+
Sbjct: 83  KNSDGGAGGPPA-KRGRKKKAKSESEDEAESDHLHDELK 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,430,897
Number of Sequences: 27780
Number of extensions: 271255
Number of successful extensions: 665
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)