Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I15
         (1113 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.023
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    28   0.13 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.40 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   8.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 397 PPXPXXXPPPPPSS 438
           PP P   PPPP SS
Sbjct: 338 PPKPAPPPPPPSSS 351



 Score = 24.6 bits (51), Expect(2) = 0.023
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 604 LXSSSPXXXPPPPPPPP 654
           L  S     P PPPPPP
Sbjct: 332 LGDSDTPPKPAPPPPPP 348



 Score = 24.6 bits (51), Expect(2) = 0.023
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 634 PPPPPPPPXXXXP 672
           P PPPPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 23.8 bits (49), Expect = 2.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 606 SLLLSXXXXPPPPPXPPPXP 665
           +++L     PP P  PPP P
Sbjct: 329 NIVLGDSDTPPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 635 PPPPXPPPXPXPXXXP 682
           PP P PPP P     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 913 PRPPPPPP 936
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 23.0 bits (47), Expect = 4.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 733 PPPPXXPXPPPPXXPP 780
           PP P  P PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 8.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 465 PPXXRPPPXPP 497
           PP   PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 28.3 bits (60), Expect = 0.13
 Identities = 20/70 (28%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
 Frame = +1

Query: 610 SSSPXXXPPPPPPPPPXXXXPXXXXXPXPXFPSX-RXPXPPXPPPPXXPXPPPPXXPPXX 786
           ++ P   P P PP P           P    P     P PP P     P   P    P  
Sbjct: 72  NNRPIYIPQPRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVY 131

Query: 787 XPXPXXPPXP 816
            P P  PP P
Sbjct: 132 IPQP-RPPHP 140



 Score = 27.1 bits (57), Expect = 0.30
 Identities = 21/70 (30%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
 Frame = +1

Query: 610 SSSPXXXPPPPPPPPPXXXXPXXXXXPXPXFPSX-RXPXPPXPPPPXXPXPPPPXXPPXX 786
           ++ P   P P PP P     P     P    P     P PP P     P   P    P  
Sbjct: 100 NNRPVYIPQPRPPHPRLRREPEAE--PGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVY 157

Query: 787 XPXPXXPPXP 816
            P P  PP P
Sbjct: 158 IPQP-RPPHP 166


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.40
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 631  PPPPPPPP 654
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 26.6 bits (56), Expect = 0.40
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 634  PPPPPPPP 657
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.0 bits (47), Expect = 4.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 913  PRPPPPPP 936
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 619  PXXXPPPPPPPPP 657
            P    P PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 23.8 bits (49), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 913  PRPPPPPP 936
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +1

Query: 688 PXPXFPSXRXPXPPXPPPPXXPXPPPPXXPPXXXP 792
           P P  P      P    PP     PPP  PP   P
Sbjct: 23  PQPS-PHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.7
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +1

Query: 367 PSXXRPPXXXPPXPXXXPPPPPSSXXXXXXXXTPPPXXXPXXPP 498
           P     P   P  P    PP PS          PPP   P  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQG--------PPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.7
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +1

Query: 718 PXPPXPPPPXXPXPPPPXXPP 780
           P P   PPP  P   PP   P
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
 Frame = +1

Query: 349 PXXTXPPSXXRPPXXXPPXPXXXPPP--PPSS 438
           P  +   S   P    PP P   PPP  PP +
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGA 54


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 688 GXGXXXGXGXGGGXGGGG 635
           G G   G G GG  G GG
Sbjct: 79  GRGKGRGHGKGGSRGRGG 96



 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 687 GXGXXXGXGXGGGXGGGG 634
           G G   G G GG  G GG
Sbjct: 79  GRGKGRGHGKGGSRGRGG 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.150    0.552 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 270,249
Number of Sequences: 438
Number of extensions: 17178
Number of successful extensions: 46
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 37475811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)