Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I12
         (965 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.034
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.42 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.74 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 19/66 (28%), Positives = 19/66 (28%)
 Frame = +1

Query: 619 PXXRXXPPXXXPXXXPXPXPPXPXXXXXXPPXXPXPPXXRXXPXXXRPXXXPXPXXXPPP 798
           P     PP   P   P   P  P      PP  P  P     P    P   P P   P P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP-AGMPAAPPLPPAAPAP 476

Query: 799 PXXXXP 816
           P    P
Sbjct: 477 PPAPAP 482



 Score = 29.1 bits (62), Expect = 0.98
 Identities = 16/57 (28%), Positives = 16/57 (28%)
 Frame = +1

Query: 628 RXXPPXXXPXXXPXPXPPXPXXXXXXPPXXPXPPXXRXXPXXXRPXXXPXPXXXPPP 798
           R  PP           PP P          P PP  R  P    P   P     PPP
Sbjct: 322 RGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 18/67 (26%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
 Frame = +1

Query: 619 PXXRXXPPXXXPXXXPXPXPPXPXXXXXXPPXXPXPPXXRXXPXXXRP-XXXPXPXXXPP 795
           P     PP       P P    P      PP  P  P          P    P P   PP
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203

Query: 796 PPXXXXP 816
           PP    P
Sbjct: 204 PPLSQAP 210



 Score = 29.9 bits (64), Expect = 0.56
 Identities = 18/66 (27%), Positives = 18/66 (27%)
 Frame = +1

Query: 619 PXXRXXPPXXXPXXXPXPXPPXPXXXXXXPPXXPXPPXXRXXPXXXRPXXXPXPXXXPPP 798
           P     P    P   P   PP P      P   P PP     P    P     P   PP 
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP-PPAQPAAPVKSPPSAPSLPSAVPPM 197

Query: 799 PXXXXP 816
           P    P
Sbjct: 198 PPKVPP 203


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 637 PPXXXPXXXPXPXPPXPXXXXXXPPXXPXPP 729
           PP       P P PP P      PP  P PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/51 (27%), Positives = 14/51 (27%)
 Frame = +1

Query: 664 PXPXPPXPXXXXXXPPXXPXPPXXRXXPXXXRPXXXPXPXXXPPPPXXXXP 816
           P P PP        P   P PP          P   P      PPP    P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +1

Query: 637 PPXXXPXXXPXPXPPXPXXXXXXPPXXPXPP 729
           PP       P P PP        PP  P PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/32 (37%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
 Frame = +1

Query: 637 PPXXXPXXXPXPXP-PXPXXXXXXPPXXPXPP 729
           P    P   P P P P P      PP  P PP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 652 PXXXPXPXPPXPXXXXXXPPXXPXPP 729
           P   P P PP P       P  P PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,386
Number of Sequences: 5004
Number of extensions: 16227
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)