Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_I11
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 35 0.018
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.17
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.30
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 29 1.2
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 28 1.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.6
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 34.7 bits (76), Expect = 0.018
Identities = 17/57 (29%), Positives = 20/57 (35%)
Frame = +3
Query: 738 HPXXVSPXPXXXPLPPQXXAXVXXXPPLSXPXPXXLXPXNXPXXXLHPPPTXPTFSP 908
HP P PPQ A PP+S P P P PPP + +P
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 773 SPPPPXXGXCXPXPPPFXPXPLXPSSX*PT 862
S PPP P PP P P P+S P+
Sbjct: 1713 SVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.17
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +2
Query: 773 SPPPPXXGXCXPXPPPFXPXPLXPSSX*PTXXXXPPPAXXP 895
SPPPP P P P P P+ P + P PPP P
Sbjct: 731 SPPPPPPAVIVPTPAP-APIPVPPPA--PIMGGPPPPPPPP 768
Score = 30.3 bits (65), Expect = 0.39
Identities = 17/57 (29%), Positives = 20/57 (35%)
Frame = +3
Query: 735 PHPXXVSPXPXXXPLPPQXXAXVXXXPPLSXPXPXXLXPXNXPXXXLHPPPTXPTFS 905
P P + P P P+P A + PP P P P PPP P S
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP-----PPPPPPAVS 786
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 731 IPPPXXGLXXSXXXSPPPPXXGXCXPXPPPFXP 829
+PPP + PPP G P PPP P
Sbjct: 751 VPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.30
Identities = 24/83 (28%), Positives = 27/83 (32%)
Frame = +3
Query: 660 SDPCPXTXYLSRLSPLRXTXPPXSYPHPXXVSPXPXXXPLPPQXXAXVXXXPPLSXPXPX 839
S P P T S L P P S P P S P PP + PP + P
Sbjct: 126 SAPAPPTPQ-SELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSL----PPPAQPAAP 180
Query: 840 XLXPXNXPXXXLHPPPTXPTFSP 908
P + P PP P P
Sbjct: 181 VKSPPSAPSLPSAVPPMPPKVPP 203
Score = 30.3 bits (65), Expect = 0.39
Identities = 16/67 (23%), Positives = 23/67 (34%)
Frame = +3
Query: 699 SPLRXTXPPXSYPHPXXVSPXPXXXPLPPQXXAXVXXXPPLSXPXPXXLXPXNXPXXXLH 878
+P PP + P +PP A P + P P L P P +
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVK 182
Query: 879 PPPTXPT 899
PP+ P+
Sbjct: 183 SPPSAPS 189
Score = 27.5 bits (58), Expect = 2.8
Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Frame = +3
Query: 570 TPQ--VRGGDTXPGL*RXPGXSPXKLPXALSCSDPCPXTXYLSRLSPLRXTXPPXSYPHP 743
TPQ +R + P P SP P S + P P + PP + P
Sbjct: 132 TPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
Query: 744 XXVSPXPXXXPLPPQXXAXV 803
V P P P PP A V
Sbjct: 192 SAVPPMPPKVPPPPLSQAPV 211
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/58 (32%), Positives = 20/58 (34%)
Frame = +3
Query: 690 SRLSPLRXTXPPXSYPHPXXVSPXPXXXPLPPQXXAXVXXXPPLSXPXPXXLXPXNXP 863
S LSPLR S P P + P P P PP P P P N P
Sbjct: 565 SALSPLRIR----SRPSPLSLPPEPLLSPTIDYSATPFPLEPPPESPGPSLQIPSNNP 618
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -1
Query: 539 SLWKNASNAAFLRFXAFCWPXAH--MVCXAV-XPDSVDN 432
+LW A + R +P +H ++C AV PDS+DN
Sbjct: 57 ALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDN 95
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/58 (29%), Positives = 19/58 (32%)
Frame = +3
Query: 735 PHPXXVSPXPXXXPLPPQXXAXVXXXPPLSXPXPXXLXPXNXPXXXLHPPPTXPTFSP 908
P P S PLPPQ + PP S P P + PP P P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +1
Query: 700 LPFGXPCRLXHTPTLXXSXXFXXSVPSPPXXGPVXPXPPP 819
LP G P P+ + +P+ P P P PPP
Sbjct: 439 LPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Score = 27.9 bits (59), Expect = 2.1
Identities = 27/107 (25%), Positives = 33/107 (30%), Gaps = 3/107 (2%)
Frame = +3
Query: 573 PQVRGGDTXPGL*RXP--GXSPXKLPXALSCSDP-CPXTXYLSRLSPLRXTXPPXSYPHP 743
PQ R P P G P L + + S+P P R +P PP
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP---ALPPLGNASR 411
Query: 744 XXVSPXPXXXPLPPQXXAXVXXXPPLSXPXPXXLXPXNXPXXXLHPP 884
P P LPP + P S P P P + PP
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/58 (31%), Positives = 20/58 (34%)
Frame = +2
Query: 734 PPPXXGLXXSXXXSPPPPXXGXCXPXPPPFXPXPLXPSSX*PTXXXXPPPAXXPXLLP 907
PP S +PPP G P PP + PT PP A P LP
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSA--PPSLP 432
Score = 27.5 bits (58), Expect = 2.8
Identities = 21/73 (28%), Positives = 26/73 (35%)
Frame = +3
Query: 618 PGXSPXKLPXALSCSDPCPXTXYLSRLSPLRXTXPPXSYPHPXXVSPXPXXXPLPPQXXA 797
P +P LP + S P L +P PP + P + P PLPP A
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475
Query: 798 XVXXXPPLSXPXP 836
PP P P
Sbjct: 476 ----PPPAPAPAP 484
Score = 26.6 bits (56), Expect = 4.9
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Frame = +3
Query: 555 ASQKSTPQVRGGDTXP--GL*RXPGXSPXKLPXALSCSDPCPXTXYLSRLSPLRXTXPPX 728
AS+ STP V + P P +P LP + P P + ++ PL P
Sbjct: 409 ASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA--PPLPAGMPAA 466
Query: 729 SYPHPXXVSPXPXXXPLPPQXXAXVXXXP 815
P +P P P P A + P
Sbjct: 467 PPLPPAAPAPPPAPAPAPAAPVASIAELP 495
Score = 26.2 bits (55), Expect = 6.4
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Frame = +2
Query: 707 SGNXAAXLIPPPXXGLXXSXXXSPPPPXXGXCXPXPPP-------FXPXPLXPSSX*PTX 865
+G+ + L PPP + P PP P PPP P PL SS +
Sbjct: 329 NGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPL-SSSRAVSN 387
Query: 866 XXXPPPA 886
PPPA
Sbjct: 388 PPAPPPA 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,183
Number of Sequences: 5004
Number of extensions: 49598
Number of successful extensions: 197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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