Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I10
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    32   0.54 
12_02_1174 - 26696869-26698191                                         30   2.9  
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544...    30   2.9  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   5.1  
06_01_0486 - 3455030-3455770                                           29   6.7  
11_04_0009 - 12132781-12133272                                         28   8.8  

>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +2

Query: 746  PPXXPPKTPXPXPXXXXXXSPXXXXXXXXXXPXPXXXPPP 865
            PP  PP TP P P       P          P P   PPP
Sbjct: 1161 PPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPP 1200



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +2

Query: 746  PPXXPPKTPXPXPXXXXXXSPXXXXXXXXXXPXPXXXPPPP 868
            PP  PP  P P P       P          P P    PPP
Sbjct: 1154 PPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPP 1194


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +2

Query: 746 PPXXPPKTPXPXPXXXXXXSPXXXXXXXXXXPXPXXXPPPP 868
           PP  PP +P P P      +P          P P   PPPP
Sbjct: 213 PPTLPPPSPPPPPPTVPPRTP--GDTPAVVEPKPQPPPPPP 251


>04_04_0137 -
           23053148-23053798,23053911-23054146,23054268-23054458,
           23054587-23056010
          Length = 833

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +2

Query: 746 PPXXPPKTPXPXPXXXXXXSPXXXXXXXXXXPXPXXXPPPP 868
           PP  PP  P P P                  P P   PPPP
Sbjct: 365 PPPPPPPPPPPPPPAVTQQQDVKTSCGPAVPPPPPPTPPPP 405


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +2

Query: 746 PPXXPPKTPXPXPXXXXXXSPXXXXXXXXXXPXPXXXPPPP 868
           PP  PPK   P P       P          P     PPPP
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPP 367


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +2

Query: 746 PPXXPPKTPXPXPXXXXXXSPXXXXXXXXXXPXPXXXPPPP 868
           PP  PP TP   P      +P          P P   PP P
Sbjct: 101 PPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPPTP 141


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 222 RSSTWAREQRWSFSKPAPERRRRIGSLR 139
           R   W RE+R S  +  P +RRR+G  R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,656,187
Number of Sequences: 37544
Number of extensions: 368948
Number of successful extensions: 3508
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3030
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)