Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I09
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   4.6  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   6.1  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    26   8.1  

>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +1

Query: 256 TSLACAVESNYALYVSSSLICIWCLVSWI*RFICXXXXXXXMASSVTLITISSALY 423
           TS   A++  + L+   ++IC+   V W+   +        + +SV L   + A+Y
Sbjct: 174 TSPYAAIQKAFPLFHKDAIICMMLSVIWLFCLVAIPRFLYFLLASVPLTMFAFAVY 229


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/61 (19%), Positives = 31/61 (50%)
 Frame = +3

Query: 195 GVCGXLRAVLSIGNVLTMVLHVTSMCCGIXLRXICFVIAYLHLVSCVLDIAFHLLTVAIV 374
           G+   + A+ ++  +   V+H + +  G+ L  IC ++++L     ++     L+++ I 
Sbjct: 110 GMLVYVNAIFAVVGIYCSVVHKSILQIGVTLTFICPMLSFLLCFRIIISQKAALVSIGIS 169

Query: 375 T 377
           T
Sbjct: 170 T 170


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 529 THRLSQSPDAIPVFSTYTWLTS 594
           ++RLS  PD IP  S   W T+
Sbjct: 604 SYRLSVIPDGIPAMSVEVWATN 625


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,111
Number of Sequences: 5004
Number of extensions: 48612
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)