Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I09
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489...    31   1.6  
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687...    30   2.1  
02_05_0341 - 28115835-28116404                                         28   8.5  

>06_03_0947 +
           26248378-26248494,26248600-26248764,26248843-26248952,
           26249065-26249179,26249310-26249408,26249485-26249694,
           26249802-26250965
          Length = 659

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
 Frame = +3

Query: 618 WLRIVVSYLGALYXXXPXPMRMFLXLXIXKVVMQIIYFGY----QPXFFXIXG----XET 773
           W   + +   ALY         F  L I KVV  ++YFGY       FF + G       
Sbjct: 586 WRSYLTAGSSALYLFLYAAFYFFTKLDITKVVSGVLYFGYMLIASAAFFVLTGTIGFYAC 645

Query: 774 YWFPKLL 794
           +WF +L+
Sbjct: 646 FWFTRLI 652


>09_06_0252 +
           21867179-21867283,21868362-21868526,21868621-21868730,
           21868802-21868904,21868998-21869110,21869204-21869357,
           21869476-21870633
          Length = 635

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
 Frame = +3

Query: 618 WLRIVVSYLGALYXXXPXPMRMFLXLXIXKVVMQIIYFGY----QPXFFXIXG----XET 773
           W   + S   ALY         F  L I K+V  I+YFGY       FF + G       
Sbjct: 562 WRSYLTSGSSALYLFLYAAFYFFTKLQITKLVSGILYFGYMLLASLAFFVLTGTIGFCAC 621

Query: 774 YWFPKLL 794
           +WF +L+
Sbjct: 622 FWFTRLI 628


>02_05_0341 - 28115835-28116404
          Length = 189

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 560 IASGLCDNRCVLNIHIVXTXKCPREWVEAVG 468
           +A  LC   CVL + +V    C R W  A G
Sbjct: 26  LAGLLCALICVLGLGLVARCACTRRWARAAG 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,054,623
Number of Sequences: 37544
Number of extensions: 329113
Number of successful extensions: 529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)