Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I09
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AL117207-5|CAB60395.1|  375|Caenorhabditis elegans Hypothetical ...    30   2.5  
U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81047-12|CAB60283.1|  322|Caenorhabditis elegans Hypothetical p...    29   5.7  

>Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical
           protein T20B3.3 protein.
          Length = 332

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = +3

Query: 177 NKTIIVGVCGXLRAVLSIGNVLTMVLHVTSMCC-----GIXLRXICFVIAYLHLVSCVLD 341
           N+T  +      R VL + + +++ +HV  + C      I ++ + + +  +HL SC+LD
Sbjct: 7   NQTGYLHTADFQRLVLHVISFISIPIHVFGVFCVFFKTPISMQSVKWSMMNVHLFSCLLD 66

Query: 342 IAFHLLTVAIV 374
           +    LT   V
Sbjct: 67  LGLSFLTTPFV 77


>AL117207-5|CAB60395.1|  375|Caenorhabditis elegans Hypothetical
           protein Y60A3A.7 protein.
          Length = 375

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 391 VTLITISSALYPGRLWXLYSWF*TSEP 471
           +TLI IS  ++P  LW LYSW+ T  P
Sbjct: 3   ITLILISIIIFPILLW-LYSWYITDIP 28


>U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical
           protein C15H9.3 protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = +3

Query: 210 LRAVLSIGNVLTMVLHVTSMCCGIXLRXIC-FVIAYLHLVSCVLDI----AFHLLTVAIV 374
           L+A++ I  +   VL V ++     LR    F++  LH V+C +D+     F + +  + 
Sbjct: 6   LKALMCIWGIFWNVLIVAAILKDRVLRNSSTFLLLSLHFVACTVDVGSRLVFDVPSEILN 65

Query: 375 TDGFQCDVNYDKF 413
              F+  VNYD F
Sbjct: 66  RPLFRLSVNYDDF 78


>Z81047-12|CAB60283.1|  322|Caenorhabditis elegans Hypothetical
           protein C41G6.14 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 499 LXVXTICMLSTHRLSQSPDAIPVFSTYTWLTSSIFSL 609
           L + +IC L  HR+     ++PV ST  + +  +FS+
Sbjct: 107 LDILSICFLQKHRVIMRLKSLPVISTGMYTSIIVFSI 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,391,070
Number of Sequences: 27780
Number of extensions: 286596
Number of successful extensions: 529
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)