Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I08
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    92   1e-19
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    91   2e-19
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    29   1.1  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    27   4.4  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   7.6  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 44/92 (47%), Positives = 61/92 (66%)
 Frame = +2

Query: 146 IVKKRXQRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIWVYRVSQTKKXRH 325
           I+KKR + F RHQSDR+ ++  +WRKPRGID+ VRRRF+G   MP I        KK R+
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKI---GYGNNKKTRY 62

Query: 326 MLPNGFRKVLVHNVKELEILMMQKGSTAQKIA 421
            +PNG +  LV NV ++E+L+M   + A +IA
Sbjct: 63  CMPNGLKAFLVRNVSDVELLLMHNKTYAAEIA 94


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 45/93 (48%), Positives = 61/93 (65%)
 Frame = +2

Query: 146 IVKKRXQRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIWVYRVSQTKKXRH 325
           IVKKR + F RHQSD + ++  +WRKPRGID+ VRRRF+G   MP I        KK R+
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKI---GYGNNKKTRY 62

Query: 326 MLPNGFRKVLVHNVKELEILMMQKGSTAQKIAS 424
            +PNG +  LV NV ++E+L+M   + A +IAS
Sbjct: 63  CMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAS 95


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -1

Query: 220 TPIPLKFV--IAIRLMPDKALRP 158
           TP+P+KFV  IA+  MP  ALRP
Sbjct: 427 TPVPIKFVADIAMHSMPRVALRP 449


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 413 FAQYFLFASSRFPAL*HCELGPYGI 339
           FA   LFA++R  A  +C  GPY I
Sbjct: 6   FALTLLFAAARVQAASNCSSGPYNI 30


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 413 FAQYFLFASSRFPAL*HCELGPYGIH 336
           +A +F + S+  PAL    +GP GIH
Sbjct: 520 YASFFDYESAAIPALIEYFVGPRGIH 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,602,050
Number of Sequences: 5004
Number of extensions: 26184
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)