Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I08
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   161   1e-41
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   8.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   8.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   8.1  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   8.1  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   8.1  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   8.1  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   8.1  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  161 bits (390), Expect = 1e-41
 Identities = 76/102 (74%), Positives = 83/102 (81%)
 Frame = +2

Query: 116 LALSPVYRPTIVKKRXQRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIWVY 295
           +A+ PVYRPTIVKKR ++FIRHQSDRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNI   
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNI--- 57

Query: 296 RVSQTKKXRHMLPNGFRKVLVHNVKELEILMMQKGSTAQKIA 421
                KK RHMLP GFRKVLVHNVKELE+LMMQ      +IA
Sbjct: 58  GYGSNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIA 99


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/81 (16%), Positives = 36/81 (44%)
 Frame = +2

Query: 164 QRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIWVYRVSQTKKXRHMLPNGF 343
           +R I + S   +K K+   +   ID R R + +       +W+ +  + ++   ++    
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWLIQQEREREHERLMKKMI 61

Query: 344 RKVLVHNVKELEILMMQKGST 406
            +  +  ++E+E L  ++  +
Sbjct: 62  LEYELRRIREIEKLGSERSKS 82


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/81 (16%), Positives = 36/81 (44%)
 Frame = +2

Query: 164 QRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIWVYRVSQTKKXRHMLPNGF 343
           +R I + S   +K K+   +   ID R R + +       +W+ +  + ++   ++    
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWLIQQEREREHERLMKKMI 61

Query: 344 RKVLVHNVKELEILMMQKGST 406
            +  +  ++E+E L  ++  +
Sbjct: 62  LEYELRRIREIEKLGSERSKS 82


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/81 (16%), Positives = 36/81 (44%)
 Frame = +2

Query: 164 QRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIWVYRVSQTKKXRHMLPNGF 343
           +R I + S   +K K+   +   ID R R + +       +W+ +  + ++   ++    
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWLIQQEREREHERLMKKMI 61

Query: 344 RKVLVHNVKELEILMMQKGST 406
            +  +  ++E+E L  ++  +
Sbjct: 62  LEYELRRIREIEKLGSERSKS 82


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/81 (16%), Positives = 36/81 (44%)
 Frame = +2

Query: 164 QRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIWVYRVSQTKKXRHMLPNGF 343
           +R I + S   +K K+   +   ID R R + +       +W+ +  + ++   ++    
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWLIQQEREREHERLMKKMI 61

Query: 344 RKVLVHNVKELEILMMQKGST 406
            +  +  ++E+E L  ++  +
Sbjct: 62  LEYELRRIREIEKLGSERSKS 82


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/81 (16%), Positives = 36/81 (44%)
 Frame = +2

Query: 164 QRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIWVYRVSQTKKXRHMLPNGF 343
           +R I + S   +K K+   +   ID R R + +       +W+ +  + ++   ++    
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWLIQQEREREHERLMKKMI 61

Query: 344 RKVLVHNVKELEILMMQKGST 406
            +  +  ++E+E L  ++  +
Sbjct: 62  LEYELRRIREIEKLGSERSKS 82


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/81 (16%), Positives = 36/81 (44%)
 Frame = +2

Query: 164 QRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIWVYRVSQTKKXRHMLPNGF 343
           +R I + S   +K K+   +   ID R R + +       +W+ +  + ++   ++    
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWLIQQEREREHERLMKKMI 61

Query: 344 RKVLVHNVKELEILMMQKGST 406
            +  +  ++E+E L  ++  +
Sbjct: 62  LEYELRRIREIEKLGSERSKS 82


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/81 (16%), Positives = 36/81 (44%)
 Frame = +2

Query: 164 QRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIWVYRVSQTKKXRHMLPNGF 343
           +R I + S   +K K+   +   ID R R + +       +W+ +  + ++   ++    
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWLIQQEREREHERLMKKMI 61

Query: 344 RKVLVHNVKELEILMMQKGST 406
            +  +  ++E+E L  ++  +
Sbjct: 62  LEYELRRIREIEKLGSERSKS 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,516
Number of Sequences: 438
Number of extensions: 1683
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)