Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_I07
(838 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.12
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 0.18
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.20
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 2.5
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 5.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 5.8
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.12
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 751 PPPXPPXPXXPPHHPXPPP 807
PPP PP PP P PPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 751 PPPXPPXPXXPPHHPXPPPTXXRASS 828
PPP PP P P PPP A S
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVS 786
Score = 26.2 bits (55), Expect = 5.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 746 PPPPPXPPP 772
PPPPP PPP
Sbjct: 775 PPPPPPPPP 783
Score = 26.2 bits (55), Expect(2) = 0.18
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 749 PPPPXPPPP 775
PPPP PPPP
Sbjct: 775 PPPPPPPPP 783
Score = 23.4 bits (48), Expect(2) = 0.18
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 746 PPPPPXPP 769
PPPPP PP
Sbjct: 761 PPPPPPPP 768
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.20
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 751 PPPXPPXPXXPPHHPXPPPTXXRASSFP 834
PP PP P PP P PP A S P
Sbjct: 1717 PPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 754 PPXPPXPXXPPHHPXPPPTXXRASSFP 834
PP P P P P PP ASS P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
Frame = +1
Query: 757 PXPPXPXXPP---HHPXPPP 807
P PP P P HHP PPP
Sbjct: 729 PAPPTPAPTPAVKHHPPPPP 748
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 5.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 746 PPPPPXPPP 772
PPPPP PPP
Sbjct: 306 PPPPPPPPP 314
Score = 26.2 bits (55), Expect = 5.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 749 PPPPXPPPP 775
PPPP PPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 5.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 746 PPPPPXPPP 772
PPPPP PPP
Sbjct: 189 PPPPPPPPP 197
Score = 26.2 bits (55), Expect = 5.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 749 PPPPXPPPP 775
PPPP PPPP
Sbjct: 189 PPPPPPPPP 197
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1
Query: 751 PPPXPPXPXXPPHHPXPPPTXXRASSFP 834
P P P PP P PPP A + P
Sbjct: 460 PAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 754 PPXPPXPXXPPHHPXPPPTXXRAS 825
PP PP PP P P P AS
Sbjct: 467 PPLPPAAPAPPPAPAPAPAAPVAS 490
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 5.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 746 PPPPPXPPP 772
PPPPP PPP
Sbjct: 945 PPPPPPPPP 953
Score = 26.2 bits (55), Expect = 5.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 749 PPPPXPPPP 775
PPPP PPPP
Sbjct: 945 PPPPPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,908
Number of Sequences: 5004
Number of extensions: 27987
Number of successful extensions: 214
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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