Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I04
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.7  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   2.7  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   4.7  

>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 626 RNHTFLPVSFTS*LIRIIKHTLTIMATST 540
           RN   LP+ F   LI I++H  TI+  S+
Sbjct: 11  RNWVLLPIMFVMILIGILRHNATILLQSS 39


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = +1

Query: 469 HTMFFFFIYLIMSICI--IPLCLLFIV 543
           +T+FFF++ ++MSI I  +P   LFIV
Sbjct: 256 NTLFFFYLPIVMSILIFCLPTQALFIV 282


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 495 VYKKKKHCMNIENKKQHKIIIRTLK*SCSATFACSVEKNM 376
           ++K   H  N  N K   ++ + L+ S S  F C   +NM
Sbjct: 783 LFKAHDHWNNTSNLKDSAVLFKVLQTSRSMAFTCQEIENM 822


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,906
Number of Sequences: 5004
Number of extensions: 48494
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)