Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I04
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40061-1|AAA81148.2|  573|Caenorhabditis elegans Hypothetical pr...    33   0.36 
CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine rece...    29   5.8  

>U40061-1|AAA81148.2|  573|Caenorhabditis elegans Hypothetical
           protein ZK563.2 protein.
          Length = 573

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 12/59 (20%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
 Frame = +1

Query: 436 NYFVLFFIFYVHTMFFFFIYLIMSICIIP---LCLLFIVDVAIIVSVCFMIRISHDVKE 603
           +++  F + ++ T+F    + I+ + ++P   + ++FI+ + I ++ CF+  + +  KE
Sbjct: 439 DHYRWFIVVFISTVFLIIPFTIIGLTLLPDNVIVIVFIIILIIAITCCFICVLQNSCKE 497


>CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical
           protein C42C1.1 protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 400 KCCTAGLFQCSNN-YFVLFFIFYVHTMFFFFI 492
           K C A  +Q S+N +F  FFI +  ++FFF I
Sbjct: 201 KYCLAERYQISDNIHFYFFFIRFASSIFFFTI 232


>Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical
           protein K03D7.6 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 405 LHCRIISMF**LFCAVFYFLCSYNVFFFYIPYYVDLYNSPLSLI 536
           L C ++ +F    C V++FL  Y +FF  +  + ++ N    LI
Sbjct: 71  LFCALLDLFLCTVCTVYFFLPMYGMFFVGVLSWFEVPNGVQLLI 114


>U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 2 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 368 LVYIFFSTEHANVALQDYFNVLIIILCCFLFSMFIQCFFF 487
           ++YI    +H N+ L+  F +L I+ C   F++ +Q  FF
Sbjct: 51  ILYILL-WKHRNLYLKQSFYILFIMSCIACFTLVVQDIFF 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,205,489
Number of Sequences: 27780
Number of extensions: 278596
Number of successful extensions: 900
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)