Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I03
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.28 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.49 

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +1

Query: 721 GXSSXSPPP*LPXPXSSGXGXXXXPPPXR-XPVIPXSRGYPXXPXSPP 861
           G S+ S PP  P P S+  G    PP  R  P  P  R  P     PP
Sbjct: 330 GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 718 IGXSSXSPPP*LPXPXSSGXGXXXXPPPXRXPVIPXSRGYPXXPXSPP 861
           +G +S +  P +P P S         PP   P +P   G P  P  PP
Sbjct: 406 LGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP--MGAPAAPPLPP 451



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
 Frame = +1

Query: 736 SPPP*LPX--PXSSGXGXXXXPP-PXRXPVIPX-SRGYPXXPXSPP 861
           S PP LP   P S   G    PP P   P+ P    G P  P  PP
Sbjct: 426 SAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +1

Query: 739 PPP*LPXPXSSGXGXXXXPPPXRXPVIPXSRGYPXXPXSPP 861
           PPP  P P  +G G    PPP        SR Y   P + P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,916
Number of Sequences: 5004
Number of extensions: 37127
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)