Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_I03
(865 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 34 0.15
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 34 0.15
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 34 0.15
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 31 1.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 1.4
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 31 1.4
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 1.9
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 1.9
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 1.9
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 1.9
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.3
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 4.3
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 4.3
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 29 5.7
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 28 7.5
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 28 7.5
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 28 9.9
U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1 (de... 28 9.9
U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1 (de... 28 9.9
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 28 9.9
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 28 9.9
AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical... 28 9.9
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 28 9.9
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 28 9.9
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 9.9
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +1
Query: 739 PPP*LPXPXSSGXGXXXXPPPXRXPVIPXSRGYPXXPXSP 858
PPP P S+G G PPP R P P G P P
Sbjct: 348 PPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 33.9 bits (74), Expect = 0.15
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Frame = -3
Query: 863 PGGXXGXXG*PRXXGITGXRXGGGXYXXPXP--XXXGXGSXGGGEXEEXPIRKRPV-PGG 693
P G G G P G G G P P G G G G P R P P G
Sbjct: 146 PPGRPGPRGPPGEVGPAGPSGDNGRKGPPGPPGGPGGPGEGGDGGRPGNPGRPGPAGPRG 205
Query: 692 GPXHXXRXNLPHRPXEPG 639
P + P RP PG
Sbjct: 206 EPGTEYKPGQPGRPGPPG 223
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +1
Query: 739 PPP*LPXPXSSGXGXXXXPPPXRXPVIPXSRGYPXXPXSP 858
PPP P S+G G PPP R P P G P P
Sbjct: 358 PPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 31.1 bits (67), Expect = 1.1
Identities = 26/80 (32%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Frame = -3
Query: 857 GXXGXXG*PRXXGITGXRXGG--GXYXXPXPXXX--GXGSXG--GGEXEEXPIRKRPVPG 696
G G G P G G R G G P P G G G GG P + P P
Sbjct: 182 GQPGHPGSPGNPGRGGQRSRGLPGPSGRPGPPGPAGGPGQPGHSGGAGSPGP-QGPPGPS 240
Query: 695 GGPXHXXRXNLPHRPXEPGN 636
G P H +P P PG+
Sbjct: 241 GQPGHSGNDGVPGAPGNPGS 260
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +1
Query: 721 GXSSXSPPP*LPXPXS-SGXGXXXXPPPXRXPVIPXSRGYPXXPXSPP 861
G SPPP P S +G PPP R P P R P P PP
Sbjct: 116 GDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPP--PRRPP 161
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +1
Query: 715 RIGXSSXSPPP*LPXPXSSGXGXXXXPPPXRXPVIPXS--RGYPXXPXSP 858
R G SS PPP P PPP R P+ P S R P P SP
Sbjct: 132 RAGGSSPPPPP---PPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSP 178
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/76 (28%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Frame = -3
Query: 857 GXXGXXG*PRXXGITGXRXGG--GXYXXPXPXXXGXGSXGGGEXEEXPIRKRPVPGGGPX 684
G G G P G G R G G P P G G+ +P G P
Sbjct: 189 GQPGHPGSPGNPGRGGQRSRGLPGPSGRPGPQGPAGGPGQPGQSGGSGTPGQPGAPGAPG 248
Query: 683 HXXRXNLPHRPXEPGN 636
H + P P PGN
Sbjct: 249 HPGQAGTPGTPGAPGN 264
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -3
Query: 761 GXGSXGGGEXEEXPIRKRPVPGGGPXHXXRXNLPHRPXEPGN 636
G G GGG + P PGG P + P P PGN
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGN 130
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -3
Query: 761 GXGSXGGGEXEEXPIRKRPVPGGGPXHXXRXNLPHRPXEPGN 636
G G GGG + P PGG P + P P PGN
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGN 130
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -3
Query: 761 GXGSXGGGEXEEXPIRKRPVPGGGPXHXXRXNLPHRPXEPGN 636
G G GGG + P PGG P + P P PGN
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGN 130
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -3
Query: 761 GXGSXGGGEXEEXPIRKRPVPGGGPXHXXRXNLPHRPXEPGN 636
G G GGG + P PGG P + P P PGN
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGN 130
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 718 IGXSSXSPPP*LPXPXSSGXGXXXXPPPXRXPVIPXSRGYPXXPXSPP 861
I + +PPP P + PPP + P S G P P PP
Sbjct: 496 INGHAPNPPPPPPLLGIAPMSTNAPPPPPMPGMAPLSTGAPTPPPPPP 543
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 727 SSXSPPP*LPXPXSSGXGXXXXPPPXRXPVIPXSRGYPXXPXSP 858
++ +PPP P P +G PPP + P S P P P
Sbjct: 484 NTNAPPP-PPMPSINGHAPNPPPPPPLLGIAPMSTNAPPPPPMP 526
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/57 (35%), Positives = 20/57 (35%)
Frame = -3
Query: 860 GGXXGXXG*PRXXGITGXRXGGGXYXXPXPXXXGXGSXGGGEXEEXPIRKRPVPGGG 690
GG G G G G GGG P P G G GGG P P GG
Sbjct: 26 GGGGGGGGCGGGCG-GGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGG 81
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/57 (35%), Positives = 20/57 (35%)
Frame = -3
Query: 860 GGXXGXXG*PRXXGITGXRXGGGXYXXPXPXXXGXGSXGGGEXEEXPIRKRPVPGGG 690
GG G G G G GGG P P G G GGG P P GG
Sbjct: 26 GGGGGGGGCGGGCG-GGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGG 81
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
F30H5.3 protein.
Length = 1599
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 755 GSXGGGEXEEXPIRKRPVPGG-GPXHXXRXNLPHRPXEPGNIK*MXLV 615
G G E E P+R RPV GG G + + + + P G ++ + +V
Sbjct: 1515 GGGDGEEEETAPVRGRPVVGGRGSVNKNKESAANGPCSNGQVQVLRIV 1562
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 715 RIGXSSXSPP-P*LPXPXSSGXGXXXXPPPXRXPVIPXSRGYPXXPXSPP 861
++G + SPP P P P S+ PPP P I P P SPP
Sbjct: 65 QVGRPTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRP----PPIPASPP 110
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 715 RIGXSSXSPP-P*LPXPXSSGXGXXXXPPPXRXPVIPXSRGYPXXPXSPP 861
++G + SPP P P P S+ PPP P I P P SPP
Sbjct: 287 QVGRPTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRP----PPIPASPP 332
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +1
Query: 730 SXSPPP*LPXPXSSGXGXXXXPPPXRXPVIPXSRGYPXXPXSPPG 864
S S PP P P PP PV P P P PPG
Sbjct: 205 SPSGPP-SPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPG 248
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = -3
Query: 755 GSXGGGEXEEXPIRKRPVPGGGPXHXXRXNLPHRPXEPGN 636
G GGG E + P G P + R P P PGN
Sbjct: 94 GGGGGGNCEACCLPGPAGPAGAPGNPGRPGKPGAPGLPGN 133
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 28.3 bits (60), Expect = 7.5
Identities = 24/79 (30%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Frame = -3
Query: 857 GXXGXXG*PRXXGITGXRXGG--GXYXXPXPXXX----GXGSXGGGEXEEXPIRKRPVPG 696
G G G P G G R G G P P G GG P + P P
Sbjct: 182 GQPGHPGSPGNPGRGGQRSRGTPGASGRPGPQGPAGAPGQPGRSGGAGTPGP-QGPPGPS 240
Query: 695 GGPXHXXRXNLPHRPXEPG 639
G P H +P P PG
Sbjct: 241 GQPGHSGNDGVPGTPGNPG 259
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = +1
Query: 715 RIGXSSXSPPP*LPXPXSSGXGXXXXPPPXRXPVIPXSRGYPXXPXSP 858
R G + PP P P + G G PP V S G P P P
Sbjct: 784 RGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRVPTPSNGAPEIPARP 831
>U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform a protein.
Length = 839
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 154 VFDPNRGTSARLQRIGN----NGGXXCSFSPVVLREFNGRKXYIK 276
+FDPN+ T + ++G N C F P+ L RK YI+
Sbjct: 578 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 622
>U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform b protein.
Length = 842
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 154 VFDPNRGTSARLQRIGN----NGGXXCSFSPVVLREFNGRKXYIK 276
+FDPN+ T + ++G N C F P+ L RK YI+
Sbjct: 581 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 625
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/76 (28%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = -3
Query: 863 PGGXXGXXG*PRXXGITGXRXGGGXYXXPXPXXXGXGSXGG-GEXEEXPIRKRPVPGGGP 687
P G G G G G G G P P G G G G+ RP P G
Sbjct: 145 PPGRPGPKGPSGLPGSAGPAGGNGRRGPPGPVG-GPGEQGPQGDAGRPGAAGRPGPAGPR 203
Query: 686 XHXXRXNLPHRPXEPG 639
P +P PG
Sbjct: 204 GEPGTEYKPGQPGRPG 219
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/76 (28%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = -3
Query: 863 PGGXXGXXG*PRXXGITGXRXGGGXYXXPXPXXXGXGSXGG-GEXEEXPIRKRPVPGGGP 687
P G G G G G G G P P G G G G+ RP P G
Sbjct: 139 PPGCPGPKGPSGLPGSAGPAGGNGRRGPPGPVG-GPGEQGPQGDAGRPGAAGRPGPAGPR 197
Query: 686 XHXXRXNLPHRPXEPG 639
P +P PG
Sbjct: 198 GEPGTEYKPGQPGRPG 213
>AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical
protein Y53F4B.25 protein.
Length = 603
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 727 SSXSPPP*LPXPXSSGXGXXXXPPPXRXPVIPXSRGY 837
++ +PPP LP P ++ PPP + P++P Y
Sbjct: 444 TNPTPPPRLPQPPTAPP--TVPPPPNQAPIVPHQPMY 478
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = +1
Query: 715 RIGXSSXSPPP*LPXPXSSGXGXXXXPPPXRXPVIPXSRGYPXXPXSP 858
R G + PP P P + G G PP V S G P P P
Sbjct: 784 RGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRVPTPSNGAPEIPARP 831
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +1
Query: 721 GXSSXSPPP*LPXPXSSGXGXXXXPPPXRXPVIPXSRGYPXXPXSPPG 864
G PP P G G P P P P + G P P P G
Sbjct: 250 GPGPAGPPGPPGPPGQDGSGGAAQPGPPGPPGPPGNDGQPGGPGQPGG 297
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 727 SSXSPPP*LPXPXSSGXGXXXXPPPXRXPVIPXSRGYPXXPXSPP 861
SS PPP + ++ PPP P+ G P P PP
Sbjct: 539 SSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPP 583
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,474,194
Number of Sequences: 27780
Number of extensions: 249928
Number of successful extensions: 702
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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