Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_I02
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    79   1e-15
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    78   1e-15
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    28   2.0  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   2.7  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   2.7  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    27   4.7  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   8.2  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 41/84 (48%), Positives = 55/84 (65%)
 Frame = +2

Query: 164 KGLTAKAISIRPASLKGLQTXHSKFVRDLVREVVGHAQYEKXAMELLKVSKDKRALKFLK 343
           K LT + +  RP+  KG  +  + FVR +VREV G A YE+  MEL++ S+DKRA K  K
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 344 RRLGTHIRAKRKREELSNVLAQMR 415
           +RLGT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 41/84 (48%), Positives = 55/84 (65%)
 Frame = +2

Query: 164 KGLTAKAISIRPASLKGLQTXHSKFVRDLVREVVGHAQYEKXAMELLKVSKDKRALKFLK 343
           K LT + +  RP+  KG  +  + FVR +VREV G A YE+  MEL++ S+DKRA K  K
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 344 RRLGTHIRAKRKREELSNVLAQMR 415
           +RLGT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 442 MVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQSTLV 317
           +V SL G    L +  A+FFT PL ++VCA + +   +  ++
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 378 SVKNLATCSLR*GRQPPRLITITI 449
           SVKNL   SL+    PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 260  VVGHAQYEKXAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLAQMR 415
            ++ HA      ++ L+VSKD       KRR+ THI  +  +R  LS V  Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 248 LVREVVGHAQYEKXAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 379
           ++RE +G   + K  +     ++ K ALKF+ R+L      H+R +R+
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 714 CLLQLXMVTNKAIAXXIXQIKHFFH 640
           CL+ L   TN  I   +   KHFFH
Sbjct: 766 CLICLETYTNGDICRKLQACKHFFH 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,869
Number of Sequences: 5004
Number of extensions: 27512
Number of successful extensions: 61
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)