Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_H22
         (903 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    94   1e-19
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    94   1e-19
U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical p...    29   3.4  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 42/51 (82%), Positives = 46/51 (90%)
 Frame = +3

Query: 75  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 227
           MSA K   IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 42/51 (82%), Positives = 46/51 (90%)
 Frame = +3

Query: 75  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 227
           MSA K   IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical
           protein F45F2.1 protein.
          Length = 475

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -3

Query: 529 NIKXMXLXLVTCLXQXIMVTNKAIASXISQIK-HFFHCILVVGLSKLINVSYHVWIQLTL 353
           +++     L TCL     VT     S   +++ H+   I+  GLS  I V+  +W  L +
Sbjct: 31  SVRPWICILRTCLYIIFHVTQVVFVSISHRVEFHYHRMIVYFGLSHTIAVNLWIWASLCI 90

Query: 352 NK 347
            K
Sbjct: 91  AK 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,792,460
Number of Sequences: 27780
Number of extensions: 266223
Number of successful extensions: 1003
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)