Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_H21
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    39   0.001
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    34   0.024
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.8  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   8.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   8.3  

>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 23/90 (25%), Positives = 34/90 (37%)
 Frame = +1

Query: 496 ILKLMEPCDHILEIQFPLRRDSGDYEMILXYRAQHSTHRTPXXGGIRFSXDVTXXEXXAL 675
           +L ++   + +LE +     D G+  +   YR Q ++   P  GG+RF   V       L
Sbjct: 35  VLPIISIPERVLEFRVTWEDDKGNCRVNTGYRVQFNSALGPYKGGLRFHPSVNLSILKFL 94

Query: 676 SXLMTFXXACVXXPXGGAXAGXXIXPXXXS 765
                F  A    P GG   G    P   S
Sbjct: 95  GFEQIFKNALTGLPMGGGKGGSDFDPKGKS 124


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 436 LVEDLKSRTPIEEKKKTVAGILKLMEPCDHILEIQFP 546
           ++ DLK +T I EK KT+ GI K++  C   +++  P
Sbjct: 880 ILNDLKGKTSINEKIKTIVGIEKMLSLCGGAVKLGLP 916


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 517 CDHILEIQFPLRR 555
           CDHI+ +Q+PL+R
Sbjct: 120 CDHIVNLQYPLKR 132


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 22/76 (28%), Positives = 34/76 (44%)
 Frame = +1

Query: 253 QNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSANPKFFHMVEYFFHRACQVVED 432
           QN+++N   R+I   ++   R Y    IP   +D    A     H  E F+ R  Q    
Sbjct: 667 QNKSMNERLRVIGKRIDHLERAYRREAIPLWEEDAKQQAE----HDREIFYEREKQ---R 719

Query: 433 KLVEDLKSRTPIEEKK 480
           K V++ K    I++KK
Sbjct: 720 KEVQERKHEQAIKDKK 735


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +1

Query: 388  MVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKTV 489
            +++ ++H AC+V+ D+LV   +    + E +K +
Sbjct: 2744 LIKVWYHEACRVLLDRLVSQKECSWGMTELQKVI 2777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,722
Number of Sequences: 5004
Number of extensions: 54722
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)