Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_H17
(852 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 92 5e-19
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 32 0.60
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 30 1.8
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 30 1.8
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu... 29 4.2
AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical... 29 4.2
U56965-2|AAB52667.3| 581|Caenorhabditis elegans Hypothetical pr... 28 9.7
U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical pr... 28 9.7
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 91.9 bits (218), Expect = 5e-19
Identities = 48/116 (41%), Positives = 69/116 (59%)
Frame = +3
Query: 141 ADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRK 320
A G +GKL ++V+VID R +DGP S V R L L LTKF LK T+ V+
Sbjct: 16 ASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKFVLKLRVGQRTKGVKA 75
Query: 321 AWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLK 488
A+ AK+ E + ++QWA+K+A + RA++TD++R+KL A+ RNR LK
Sbjct: 76 AFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRNRIVRVELAKLK 131
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 31.9 bits (69), Expect = 0.60
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 357 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVXAAR 503
E+QWA ++ RA +T+YDR K R+ T L V AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +3
Query: 270 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 443
+FR+ K A A + +KA T EK + AQK A EK+A+ T + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163
Query: 444 VKRNRARTAVFKSLKVXAARA 506
VK+ ++ + K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +3
Query: 270 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 443
+FR+ K A A + +KA T EK + AQK A EK+A+ T + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163
Query: 444 VKRNRARTAVFKSLKVXAARA 506
VK+ ++ + K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184
>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
protein 1 protein.
Length = 1010
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = -2
Query: 533 RDIFLAEGTSTRSXHLQALEYGSPGTVPLNSCSC*LEP 420
RDI LA TS RS HL + + +PGT L S + L P
Sbjct: 746 RDI-LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782
>AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical
protein Y87G2A.13 protein.
Length = 468
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/79 (22%), Positives = 35/79 (44%)
Frame = -3
Query: 361 LSVHFSLSLASVHAFLTRRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGPSTSARVWSIT 182
L H +L+ V A + G V Y + + + +++ +CC GP+ A ++++
Sbjct: 333 LQAHLNLAYDKV-AEMRAEAGKVKNYTIQAMI-YRYYRYLCCAALQYFGPAVLALLFALL 390
Query: 181 STTLTNFPFKGPSAXQGDT 125
T N + G Q +T
Sbjct: 391 LKTTGNLSWIGAPTPQSNT 409
>U56965-2|AAB52667.3| 581|Caenorhabditis elegans Hypothetical
protein C15H9.5 protein.
Length = 581
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 655 ILXSXLKICXSHITCRRHKNNYFLAGFLVAFLVRTFFAAALGIFF 521
IL L + SH+ CR + N + +A LV F AL +FF
Sbjct: 266 ILYFGLAVYWSHLLCRSNSENIYRVHKFMAVLV---FLKALSVFF 307
>U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical
protein W04D12.1 protein.
Length = 85
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 342 NEKWTESQWAQKLANKEKRAQMTDYDRFK 428
N KW A K+A KEK+ +M D ++ K
Sbjct: 43 NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,489,429
Number of Sequences: 27780
Number of extensions: 284795
Number of successful extensions: 797
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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