Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_H12
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0513 + 9035204-9035422,9035552-9036091,9036512-9036742,903...    31   1.6  
04_04_0524 - 25916869-25916876,25917352-25917506,25917712-259178...    29   3.8  
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   5.0  

>03_02_0513 +
           9035204-9035422,9035552-9036091,9036512-9036742,
           9036829-9036969,9037344-9037541,9037644-9037937
          Length = 540

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 29/100 (29%), Positives = 48/100 (48%)
 Frame = +2

Query: 152 ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTME 331
           E++ DTS +  EE L+  ++  D D A    L+  S  +  +I+      + D R  T+ 
Sbjct: 444 EITPDTSTETAEEMLHRWLMKEDVDRA----LDGLSPRERQVIRYRFG--MDDGRLRTLH 497

Query: 332 YCYKLWVGNGQEIVRKYFPLNFRLIMGRKLCQDHLQKLQP 451
              +L +G  +E +R+   + FR + GRK  Q     LQP
Sbjct: 498 DIGRL-MGVSRERIRQIELVAFRKLRGRKKVQSLQHYLQP 536


>04_04_0524 -
           25916869-25916876,25917352-25917506,25917712-25917841,
           25918013-25918094,25918180-25918213,25918271-25918327,
           25918686-25918791,25920755-25920881
          Length = 232

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 611 VLVYLVLW-ILKYTLLFSXQGNELPTDEFSMLV 516
           +L+  +LW IL+Y L F  + N LP D F+ LV
Sbjct: 44  ILMLCLLWYILRYVLGFFQRYNLLPRDSFTFLV 76


>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -2

Query: 312 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 148
           L+++ L+   W + P   L     + S      L  SP   +  SF S +    S D++T
Sbjct: 36  LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95

Query: 147 TPALAASMHIANTTR 103
            P   A+  +A TTR
Sbjct: 96  VPTTTAAARVAATTR 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,847,991
Number of Sequences: 37544
Number of extensions: 408234
Number of successful extensions: 1062
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)