Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_H11
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   2.5  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    27   4.4  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    26   5.8  
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...    26   5.8  
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...    26   5.8  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   5.8  
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...    26   5.8  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    26   7.7  

>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 274 AALKSSMLSLITNKK---SSCGIYTGIHALFSRGDFRSIEGVPLGKNSS 411
           ++L SS  SL+  KK   SS  +    HAL    +F + EGVPL   ++
Sbjct: 33  SSLHSSENSLVNGKKATVSSTNVPKKRHALDDVSNFHNKEGVPLASKNT 81


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 460 TIFVTSSIIWFIIGP 416
           T+F  SS+IW +IGP
Sbjct: 617 TVFFNSSVIWGVIGP 631


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -1

Query: 227 SSLLPDSWNLPEASTTR*YSLKYV*SYRNCWPPTEQIRINPKTRLLFGAFNIYTTN 60
           SS+LP    L  A++T   S+ Y  S  +  PPT   ++  +  L + AF++Y  N
Sbjct: 192 SSMLPYKGVLGLAASTEINSIDYSDSISSFSPPTFLEQLVKEDILAYPAFSMYLDN 247


>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 146 RNCWPPTEQIRINP 105
           RNCWP T  + +NP
Sbjct: 192 RNCWPRTRGVAMNP 205


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 146 RNCWPPTEQIRINP 105
           RNCWP T  + +NP
Sbjct: 192 RNCWPRTRGVAMNP 205


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 407 PHDWADYEPDNAGGDENCILMYPDGNFADV 496
           PH W DYE ++    +NC L   +   ADV
Sbjct: 174 PHCWVDYESNDIESVQNCWLGDENLLLADV 203


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 146 RNCWPPTEQIRINP 105
           RNCWP T  + +NP
Sbjct: 192 RNCWPRTRGVAMNP 205


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 422 DYEPDNAGGDENCILMYPDG 481
           +Y PD+     N +L YPDG
Sbjct: 247 NYSPDDVAPPPNWVLRYPDG 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,470
Number of Sequences: 5004
Number of extensions: 57544
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)