Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_H10
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.86 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.86 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.86 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   4.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   8.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 289 TIMLILNARLPKRGRKKNISIHRV*CIVSIF 381
           T+M   NA LPK    K+I ++   C V +F
Sbjct: 265 TLMSSTNAALPKISYVKSIDVYLGTCFVMVF 295


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 289 TIMLILNARLPKRGRKKNISIHRV*CIVSIF 381
           T+M   NA LPK    K+I ++   C V +F
Sbjct: 265 TLMSSTNAALPKISYVKSIDVYLGTCFVMVF 295


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 289 TIMLILNARLPKRGRKKNISIHRV*CIVSIF 381
           T+M   NA LPK    K+I ++   C V +F
Sbjct: 204 TLMSSTNAALPKISYVKSIDVYLGTCFVMVF 234


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = -2

Query: 271 IREFNTHINISLSIKYMYFLHEYQVSSQ---SDAWFSSYNGTSLKTTVD 134
           +REFN + N+   + + Y L   +VS +      W   + G  +    D
Sbjct: 40  VREFNVYWNVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYD 88


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 207 NTKFQVNRMHG 175
           NT FQVN+ HG
Sbjct: 688 NTHFQVNQSHG 698


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 237 YPLSTCIFYMNT 202
           YPL+ C++Y +T
Sbjct: 298 YPLTGCLYYFST 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,292
Number of Sequences: 438
Number of extensions: 3734
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)