Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_H08
         (1253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.33 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   7.2  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   9.5  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 29/123 (23%), Positives = 43/123 (34%), Gaps = 2/123 (1%)
 Frame = +1

Query: 778  PSSSRXXAXXKXLXAPWXVPXXQXXSTXXXXATHPNXXAXVPSARLPTP*XXPCXXXXAH 957
            PS+    A      AP  +P     S      T        PSA    P   P     A 
Sbjct: 951  PSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSA----PLSKPVSTSPAA 1006

Query: 958  PSSRXXXXXXXATXXXTPPLPAHXXPXLR--NAPPXITSPXTXRPXPRXSPHXXSSXPXL 1131
            P +R       ++     PLP+   P +   +  P +  P +  P P+ S    S+ P +
Sbjct: 1007 PLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPV 1066

Query: 1132 PSP 1140
            P+P
Sbjct: 1067 PAP 1069


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 1006 TPPLPAHXXPXLRNAPPXITSPXTXRPXPRXSPHXXSSXPXLPSP 1140
            TPP P    P   +APP    P +  P P  +    SS P +P+P
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPA----SSAPSVPNP 1746


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/65 (24%), Positives = 24/65 (36%)
 Frame = +1

Query: 1048 APPXITSPXTXRPXPRXSPHXXSSXPXLPSPXPLTXPXXSLSSLXLXXIXXPPXPQXAXX 1227
            APP   +P T +   R  P      P +P P P + P     +  +     PP    A  
Sbjct: 123  APPSAPAPPTPQSELRP-PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPV 181

Query: 1228 RXXPA 1242
            +  P+
Sbjct: 182  KSPPS 186



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 1009 PPLPAHXXPXLRNAPPXITSPXTXRPXPRXSPHXXSSXPXLPSPXP 1146
            PP P        +APP  + P    P P  +P   S  P +PS  P
Sbjct: 130  PPTPQSELRPPTSAPPRPSIPP---PSPASAPPIPSKAPPIPSSLP 172


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 1033 PXLRNAPPXITSPXTXRPXPRXS 1101
            P  RN PP +T P    P P  S
Sbjct: 211  PPSRNVPPPVTRPNQYNPEPNFS 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,780,210
Number of Sequences: 5004
Number of extensions: 15460
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 679614876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)