Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_H06
(887 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 33 0.36
U53181-4|AAO12438.1| 440|Caenorhabditis elegans Heavy chain, un... 29 3.4
U53181-3|AAM29688.1| 516|Caenorhabditis elegans Heavy chain, un... 29 3.4
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un... 29 3.4
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un... 29 3.4
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein. 29 3.4
AF022975-1|AAB70675.3| 587|Caenorhabditis elegans Hypothetical ... 29 4.4
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 28 7.8
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 28 7.8
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 28 7.8
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 115 CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 270
CA + A ++LNY RT L+ +NC P TT + + A N + AP
Sbjct: 38 CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88
>U53181-4|AAO12438.1| 440|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform e protein.
Length = 440
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 31 EFLKILICRLEGDLERLLTK*NFSLYLRCA 120
EF +I++C L+ L RLLTK N YL A
Sbjct: 62 EFARIIVCELKPTLARLLTK-NLPAYLLVA 90
>U53181-3|AAM29688.1| 516|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform c protein.
Length = 516
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 31 EFLKILICRLEGDLERLLTK*NFSLYLRCA 120
EF +I++C L+ L RLLTK N YL A
Sbjct: 138 EFARIIVCELKPTLARLLTK-NLPAYLLVA 166
>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform a protein.
Length = 1837
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 31 EFLKILICRLEGDLERLLTK*NFSLYLRCA 120
EF +I++C L+ L RLLTK N YL A
Sbjct: 1459 EFARIIVCELKPTLARLLTK-NLPAYLLVA 1487
>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform b protein.
Length = 1839
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 31 EFLKILICRLEGDLERLLTK*NFSLYLRCA 120
EF +I++C L+ L RLLTK N YL A
Sbjct: 1461 EFARIIVCELKPTLARLLTK-NLPAYLLVA 1489
>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
Length = 1839
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 31 EFLKILICRLEGDLERLLTK*NFSLYLRCA 120
EF +I++C L+ L RLLTK N YL A
Sbjct: 1461 EFARIIVCELKPTLARLLTK-NLPAYLLVA 1489
>AF022975-1|AAB70675.3| 587|Caenorhabditis elegans Hypothetical
protein K09C6.7 protein.
Length = 587
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 565 CXSPTR**TSN*RVQYACLHHRRRQFSHSRDWLWNRASERGCS 437
C +P R + R + HRR+++ R W+ RA + G S
Sbjct: 147 CSAPQRKAARHLRWDWTLARHRRKRYQKYRRWMAGRAKKMGLS 189
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 173 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 283
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 173 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 283
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 173 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 283
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,984,496
Number of Sequences: 27780
Number of extensions: 305918
Number of successful extensions: 977
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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