Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_H05
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    29   3.6  
02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160...    29   3.6  

>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +2

Query: 743 TTPXAXLLXFXVPXXVCXXXXPXXPXPXPPXXPPPP 850
           +TP    +    P  V     P  P P PP  PPPP
Sbjct: 328 STPDTKQVTSPSPRPVQPSNAPPPPPPPPPPPPPPP 363


>02_04_0567 -
           23914330-23914461,23915016-23915136,23915954-23916048,
           23916131-23916301,23917291-23917380,23917636-23918139
          Length = 370

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 788 VCXXXXPXXPXPXPPXXPPPP 850
           +C    P  P P PP  PPPP
Sbjct: 36  LCPPPPPPPPPPPPPPPPPPP 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,513,090
Number of Sequences: 37544
Number of extensions: 275451
Number of successful extensions: 1867
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)