Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_G19
(1570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 37 0.038
01_01_0070 - 542603-542686,542803-543441 37 0.050
03_01_0515 - 3864796-3865425 33 0.62
04_03_0904 + 20717005-20718087 31 2.5
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 30 5.7
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 30 5.7
03_06_0316 + 33091194-33091370,33091451-33092155 30 5.7
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 37.1 bits (82), Expect = 0.038
Identities = 32/120 (26%), Positives = 40/120 (33%), Gaps = 5/120 (4%)
Frame = +3
Query: 1185 PXSPXXXXXSPGEXXPXXAAPNXKRXATPQVXTXSRP--AXXXKAPXAPSDTPARSPXMR 1358
P +P SP + P P K TP+ S P A P P +P
Sbjct: 696 PPAPEGHMPSPPKSTP----PVEKSPPTPESEASSPPPPAPEGHTPSPPKSSPPEEKSPP 751
Query: 1359 TPXXXTHXSKXXPRXXTPXP---RTXXARXPPXRTXHPXXPSXQNARXXPPREASAVAPA 1529
P +H S P TP P + PP + PS + PP E S PA
Sbjct: 752 IPPT-SHTSPPTPEEYTPSPPKSSPPEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPA 810
Score = 32.7 bits (71), Expect = 0.82
Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 2/118 (1%)
Frame = +3
Query: 1182 SPXSPXXXXXSPGEXXPXXAAPNXKRXATPQVXTXSRPAXXX--KAPXAPSDTPARSPXM 1355
SP P +P + P ++P S P +P P +P P
Sbjct: 821 SPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSSSPPPEAHVSSPPPPEKSPP-PPET 879
Query: 1356 RTPXXXTHXSKXXPRXXTPXPRTXXARXPPXRTXHPXXPSXQNARXXPPREASAVAPA 1529
++P T P +P T + PP + P P + PP V P+
Sbjct: 880 KSPPTLTPEISPPPEGKSPPSHTPESSSPPSKESEP--PPTPTPKSSPPSHEEYVPPS 935
Score = 31.1 bits (67), Expect = 2.5
Identities = 23/115 (20%), Positives = 40/115 (34%)
Frame = +3
Query: 1182 SPXSPXXXXXSPGEXXPXXAAPNXKRXATPQVXTXSRPAXXXKAPXAPSDTPARSPXMRT 1361
SP P SP P P+ + + P+ + P K+P + + + P ++
Sbjct: 749 SPPIPPTSHTSP--PTPEEYTPSPPKSSPPEEKSPP-PHSPEKSPPSEAHPTSPPPSEKS 805
Query: 1362 PXXXTHXSKXXPRXXTPXPRTXXARXPPXRTXHPXXPSXQNARXXPPREASAVAP 1526
P S +P P + PP P + PP ++S+ P
Sbjct: 806 PPTPAEESSPPTPEKSPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSSSPPP 860
Score = 29.5 bits (63), Expect = 7.6
Identities = 29/121 (23%), Positives = 40/121 (33%), Gaps = 5/121 (4%)
Frame = +3
Query: 1191 SPXXXXXSPGEXXPXXAAPNXKRXATPQVXTXSRPAXXXKAPXAPSDTPARSPXMRTPXX 1370
SP SP P P + P S P K+P P+ P +++P
Sbjct: 1144 SPPPPEKSPPPPAPVILPPPPIKSPPPPAPVIS-PPPPVKSPPPPAPVILPPPPVKSPPP 1202
Query: 1371 XTHX-SKXXPRXXTPXPRTXXARXPPXRTXHPXXP--SXQNARXXPPREASAV--APALK 1535
S P P P PP ++ P P S PP A + PA+K
Sbjct: 1203 PAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPPEKSPPPAAPVILSPPAVK 1262
Query: 1536 A 1538
+
Sbjct: 1263 S 1263
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 36.7 bits (81), Expect = 0.050
Identities = 32/122 (26%), Positives = 37/122 (30%)
Frame = +3
Query: 1161 QHDVLAXSPXSPXXXXXSPGEXXPXXAAPNXKRXATPQVXTXSRPAXXXKAPXAPSDTPA 1340
Q A + +P +P + P A P TP V P AP P
Sbjct: 27 QSPAAAPAQPTPTPVPTAPAKSPPAPATPAPTATPTPPVAPAKAPPVAPAV--APVTPPP 84
Query: 1341 RSPXMRTPXXXTHXSKXXPRXXTPXPRTXXARXPPXRTXHPXXPSXQNARXXPPREASAV 1520
+P P T P TP P T PP T P P P EA A
Sbjct: 85 PTPKKAPPPPVT------PPPVTPPPVTPPPVSPPPATPPPALPPSTPPPVAAPAEAPAA 138
Query: 1521 AP 1526
P
Sbjct: 139 LP 140
>03_01_0515 - 3864796-3865425
Length = 209
Score = 33.1 bits (72), Expect = 0.62
Identities = 26/96 (27%), Positives = 32/96 (33%), Gaps = 3/96 (3%)
Frame = +3
Query: 1242 APNXKRXATP-QVXTXSRPAXXXKAPXAPSDTP--ARSPXMRTPXXXTHXSKXXPRXXTP 1412
AP+ + A+P T + P P S P A P M P + P P
Sbjct: 30 APSPEAEASPPSPPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLP 89
Query: 1413 XPRTXXARXPPXRTXHPXXPSXQNARXXPPREASAV 1520
P A PP P PS + PP S V
Sbjct: 90 PPPPPPAASPPPPPPSPPPPSPVKSSPPPPPAWSPV 125
>04_03_0904 + 20717005-20718087
Length = 360
Score = 31.1 bits (67), Expect = 2.5
Identities = 23/92 (25%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Frame = +3
Query: 1212 SPGEXXPXXAAPNXKRXATPQVXTXSR-----PAXXXKAPXAPSDTPARSPXMRTPXXXT 1376
+P P P K TP T + P + P+ TP + TP T
Sbjct: 268 TPTPYTPPTYKPQPKPTPTPTPYTPTPKPNPPPTYKPQPKPTPTPTPYKPQPKPTPSPYT 327
Query: 1377 HXSKXXPRXXTPXPRTXXARXPPXRTXHPXXP 1472
P TP P + PP T P P
Sbjct: 328 PKPTPTPPTYTPTPTPPYHKPPPSYTPGPPPP 359
Score = 30.7 bits (66), Expect = 3.3
Identities = 19/66 (28%), Positives = 23/66 (34%)
Frame = +3
Query: 1266 TPQVXTXSRPAXXXKAPXAPSDTPARSPXMRTPXXXTHXSKXXPRXXTPXPRTXXARXPP 1445
TP T +P P P+ TP +P TP K P TP P + P
Sbjct: 92 TPPPYTP-KPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQP 150
Query: 1446 XRTXHP 1463
T P
Sbjct: 151 KPTPPP 156
>12_02_0370 + 18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 29.9 bits (64), Expect = 5.7
Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Frame = +3
Query: 1245 PNXKRXATPQVXTXSRPAXXXKAPXAPSDTPARSPXMRTPXXXTHXSKXXPRXXTPXPRT 1424
P ++P T + + P APS P P P S+ P P P+
Sbjct: 23 PRHAAPSSPSQPTTTSRSIPVVLPSAPSSKPP-PPTQTAPPVPVVISEPPPPQPQPEPQP 81
Query: 1425 XXARXPPX--RTXHPXXPSXQNARXXPP 1502
PP P P+ N PP
Sbjct: 82 AAPSQPPPPQEQPSPPPPASSNTTQQPP 109
>07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 29.9 bits (64), Expect = 5.7
Identities = 30/125 (24%), Positives = 40/125 (32%)
Frame = +3
Query: 1176 AXSPXSPXXXXXSPGEXXPXXAAPNXKRXATPQVXTXSRPAXXXKAPXAPSDTPARSPXM 1355
A + SP SP +R A SR +P +P TP P
Sbjct: 130 ARARPSPRSIMASPARFSRDAMGSRSERFADHSTPFMSRTPRFLASP-SPKTTPTAPPPP 188
Query: 1356 RTPXXXTHXSKXXPRXXTPXPRTXXARXPPXRTXHPXXPSXQNARXXPPREASAVAPALK 1535
T + S +P R + PP + S AR ASAV L+
Sbjct: 189 TTTKKKSVKSLFNGLLSSPFTRPSPKQPPPTKPAAISPASPSPARCSATAAASAVPGRLQ 248
Query: 1536 AKXSA 1550
A+ A
Sbjct: 249 AQGKA 253
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 29.9 bits (64), Expect = 5.7
Identities = 28/112 (25%), Positives = 37/112 (33%)
Frame = +3
Query: 1176 AXSPXSPXXXXXSPGEXXPXXAAPNXKRXATPQVXTXSRPAXXXKAPXAPSDTPARSPXM 1355
A P SP P A P K A + KA AP+ PA++
Sbjct: 185 AAKPKSPAKPAAKPKAAPKAKAKPAAKPKAKAAPKPKAAAVTKTKATSAPARRPAKA--A 242
Query: 1356 RTPXXXTHXSKXXPRXXTPXPRTXXARXPPXRTXHPXXPSXQNARXXPPREA 1511
+T T K P P A+ P + P + AR P R+A
Sbjct: 243 KTSAKDTPSKKAAPAAKKP---AAAAKKAPAKKAAPAKKAAAPARKVPARKA 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,230,697
Number of Sequences: 37544
Number of extensions: 207674
Number of successful extensions: 547
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5070121196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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