Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_G19
(1570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.55
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.55
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.55
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 2.2
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 29 6.8
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.1 bits (72), Expect = 0.55
Identities = 25/97 (25%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Frame = +3
Query: 1254 KRXATPQVXTXSRPAXXXKAPXAPSDTPARSPXMRTPXXXTHXSKXXPRXXTPXPRTXXA 1433
KR A P P P A S +P P +P S P +P P
Sbjct: 228 KRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 287
Query: 1434 RXPPXRTXHPXXP-----SXQNARXXPPREASAVAPA 1529
PP R P P S PP+ + PA
Sbjct: 288 SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 324
Score = 30.3 bits (65), Expect = 3.9
Identities = 22/73 (30%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Frame = -1
Query: 526 GSAXPPSPRRGXXXXGGXXPPPXGXXXXPRRWRXXAPLXAPXXXRSVXXSPRXXAXGXXG 347
GS PP P RG G PP G P +P P R G
Sbjct: 295 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPA--GTGSPPPPPRQKRQAPERSPPTGSPPTG 352
Query: 346 SPXGGAXP-XAPG 311
SP G P PG
Sbjct: 353 SPPTGRPPRGGPG 365
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.55
Identities = 25/97 (25%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Frame = +3
Query: 1254 KRXATPQVXTXSRPAXXXKAPXAPSDTPARSPXMRTPXXXTHXSKXXPRXXTPXPRTXXA 1433
KR A P P P A S +P P +P S P +P P
Sbjct: 249 KRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 308
Query: 1434 RXPPXRTXHPXXP-----SXQNARXXPPREASAVAPA 1529
PP R P P S PP+ + PA
Sbjct: 309 SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 345
Score = 30.3 bits (65), Expect = 3.9
Identities = 22/73 (30%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Frame = -1
Query: 526 GSAXPPSPRRGXXXXGGXXPPPXGXXXXPRRWRXXAPLXAPXXXRSVXXSPRXXAXGXXG 347
GS PP P RG G PP G P +P P R G
Sbjct: 316 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPA--GTGSPPPPPRQKRQAPERSPPTGSPPTG 373
Query: 346 SPXGGAXP-XAPG 311
SP G P PG
Sbjct: 374 SPPTGRPPRGGPG 386
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.55
Identities = 25/97 (25%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Frame = +3
Query: 1254 KRXATPQVXTXSRPAXXXKAPXAPSDTPARSPXMRTPXXXTHXSKXXPRXXTPXPRTXXA 1433
KR A P P P A S +P P +P S P +P P
Sbjct: 234 KRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 293
Query: 1434 RXPPXRTXHPXXP-----SXQNARXXPPREASAVAPA 1529
PP R P P S PP+ + PA
Sbjct: 294 SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 330
Score = 30.3 bits (65), Expect = 3.9
Identities = 22/73 (30%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Frame = -1
Query: 526 GSAXPPSPRRGXXXXGGXXPPPXGXXXXPRRWRXXAPLXAPXXXRSVXXSPRXXAXGXXG 347
GS PP P RG G PP G P +P P R G
Sbjct: 301 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPA--GTGSPPPPPRQKRQAPERSPPTGSPPTG 358
Query: 346 SPXGGAXP-XAPG 311
SP G P PG
Sbjct: 359 SPPTGRPPRGGPG 371
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +1
Query: 853 AAXPHXPPPXIXXXATXXSPXXSXPPXTPRRXXXXTPRTXRXPXHR 990
++ P PPP + SP PP TP PRT P R
Sbjct: 136 SSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPR 181
Score = 29.5 bits (63), Expect = 6.8
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +1
Query: 856 AXPHXPPPXIXXXATXXSPXXSXPPXTPRRXXXXTPRTXRXP 981
A P PPP A SP PP PR +P R P
Sbjct: 120 ASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPP 161
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical protein
Y49E10.10 protein.
Length = 425
Score = 29.5 bits (63), Expect = 6.8
Identities = 28/118 (23%), Positives = 36/118 (30%), Gaps = 4/118 (3%)
Frame = +3
Query: 1194 PXXXXXSPGEXXPXXAAPNXKRXATPQVXTXSRPAXXXKAPXAPS----DTPARSPXMRT 1361
P P + P P + T + AP P +T A P
Sbjct: 115 PNPPAGDPSKTKPQGGDPAKPKPQTGDPYATNSTVKPATAPVTPEPTVKNTTAAEPTTEA 174
Query: 1362 PXXXTHXSKXXPRXXTPXPRTXXARXPPXRTXHPXXPSXQNARXXPPREASAVAPALK 1535
P T + P P P T A PP T P P+ +E + VAP K
Sbjct: 175 PPPPTTKAPPPPTTKAPPPPTTKA-PPPPTTKAPPPPTTN-------KEVTTVAPVPK 224
Score = 29.1 bits (62), Expect = 9.0
Identities = 25/116 (21%), Positives = 33/116 (28%)
Frame = +3
Query: 1182 SPXSPXXXXXSPGEXXPXXAAPNXKRXATPQVXTXSRPAXXXKAPXAPSDTPARSPXMRT 1361
S P +P A A P T + P KAP P+ P +
Sbjct: 147 STVKPATAPVTPEPTVKNTTAAEPTTEAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTKA 206
Query: 1362 PXXXTHXSKXXPRXXTPXPRTXXARXPPXRTXHPXXPSXQNARXXPPREASAVAPA 1529
P T + P P A P +P P A+ + A PA
Sbjct: 207 PPPPTTNKEVTTVAPVPKPAPVTAPAP-----NPPAPENTTAKVETTKPTKAAPPA 257
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,419,043
Number of Sequences: 27780
Number of extensions: 130459
Number of successful extensions: 410
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4535578426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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