Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_G14
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 182 6e-47
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 182 8e-47
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 29 1.1
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 27 4.5
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 27 4.5
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 4.5
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 26 5.9
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 182 bits (443), Expect = 6e-47
Identities = 86/132 (65%), Positives = 100/132 (75%), Gaps = 1/132 (0%)
Frame = +3
Query: 159 RSPRYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRII 338
R Y+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT ++GV++ K V R +
Sbjct: 26 RLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYM 85
Query: 339 PKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS-GT 515
KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP AH VS
Sbjct: 86 EKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTEN 145
Query: 516 EKPVLLAPIPYE 551
+PV L P+ Y+
Sbjct: 146 NEPVTLHPVAYD 157
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +2
Query: 83 MTNSKGYRRGTRXLFARRFRTHGTIPLST 169
M +S G R TR F R FR HG I LST
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLST 29
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 182 bits (442), Expect = 8e-47
Identities = 86/132 (65%), Positives = 100/132 (75%), Gaps = 1/132 (0%)
Frame = +3
Query: 159 RSPRYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRII 338
R Y+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT ++GV++ K V R +
Sbjct: 26 RLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYM 85
Query: 339 PKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS-GT 515
KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP AH VS
Sbjct: 86 EKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTEN 145
Query: 516 EKPVLLAPIPYE 551
+PV L P+ Y+
Sbjct: 146 NEPVTLHPVAYD 157
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +2
Query: 83 MTNSKGYRRGTRXLFARRFRTHGTIPLST 169
M +S G R TR F R FR HG I LST
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLST 29
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = -1
Query: 524 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 360
GF S+T SF+G W+ L + + G L G LQ + +++SL EV ++ + L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503
Query: 359 TDIDALRYN 333
++RY+
Sbjct: 504 RAFGSIRYS 512
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 144 HMELFRSPRYMKVYKVGDIVDIRGNGAVQKGMPHKVY---HGKTGRV 275
H FRS R +KV +V D+R N Q PH + H +TG V
Sbjct: 113 HRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVV 159
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 144 HMELFRSPRYMKVYKVGDIVDIRGNGAVQKGMPHKVY---HGKTGRV 275
H FRS R +KV +V D+R N Q PH + H +TG V
Sbjct: 113 HRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVV 159
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -3
Query: 93 EFVIFEPCVTKLDG 52
EFVIFE C+T+++G
Sbjct: 726 EFVIFEACLTRIEG 739
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 26.2 bits (55), Expect = 5.9
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = -1
Query: 455 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 291
+A SLG Q +L +LSA G M D+ + PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,355
Number of Sequences: 5004
Number of extensions: 46969
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -