Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_G13
         (1268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.063
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.26 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.45 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.78 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.0  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   4.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   7.3  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   9.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.063
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = +1

Query: 673 PPPAXXXSPPXHXGXXGAALPPHXXKPXLPPPPPXXXLSXXXPPXPPXXPTKTAA 837
           PPP      P          PP       PPPPP   ++   PP PP  P   +A
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSA 787


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 23/71 (32%), Positives = 23/71 (32%)
 Frame = -2

Query: 775 RGGGGGGXVXXXGGGARPXXAPXGXEGXEXXRGGGSRXGKXXGGRXXGEXFXF*XXXPXG 596
           RG  GGG     GG   P   P G  G     G G   G   G       F      P G
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF---EGGPGG 239

Query: 595 XXGKXGXGGGG 563
             G  G  GGG
Sbjct: 240 FGGGPGGFGGG 250


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +1

Query: 724 AALPPHXXKPXLPPPPPXXXLSXXXPPXPPXXPTKTAALSSP 849
           A+LPP    P  PPPPP        PP PP    K     +P
Sbjct: 2   ASLPPGNPPP--PPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 20/67 (29%), Positives = 21/67 (31%)
 Frame = +1

Query: 637 PXXPLLXFXXGSPPPAXXXSPPXHXGXXGAALPPHXXKPXLPPPPPXXXLSXXXPPXPPX 816
           P  P       S PP+   S P        A PP    P  P  PP        PP PP 
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP--LPPSAPIAPPLPAGMPAAPPLPPA 472

Query: 817 XPTKTAA 837
            P    A
Sbjct: 473 APAPPPA 479



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 22/79 (27%), Positives = 26/79 (32%)
 Frame = +1

Query: 598 PGGXPXKTXKXRRPXXPLLXFXXGSPPPAXXXSPPXHXGXXGAALPPHXXKPXLPPPPPX 777
           P G   +T     P  P L     +PP     +PP       AA P     P  PP P  
Sbjct: 405 PLGNASRTSTPPVPTPPSLP--PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG 462

Query: 778 XXLSXXXPPXPPXXPTKTA 834
              +   PP  P  P   A
Sbjct: 463 MPAAPPLPPAAPAPPPAPA 481



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 20/59 (33%), Positives = 24/59 (40%)
 Frame = +1

Query: 673 PPPAXXXSPPXHXGXXGAALPPHXXKPXLPPPPPXXXLSXXXPPXPPXXPTKTAALSSP 849
           PPP     PP         LPP       PPPPP    S    P PP   + + A+S+P
Sbjct: 337 PPPPP---PPRSNAAGSIPLPPQGRSAP-PPPPPRSAPSTGRQP-PPL--SSSRAVSNP 388



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/60 (26%), Positives = 22/60 (36%)
 Frame = +1

Query: 670 SPPPAXXXSPPXHXGXXGAALPPHXXKPXLPPPPPXXXLSXXXPPXPPXXPTKTAALSSP 849
           +PP     +PP        +LP     P  PP PP   ++   P   P  P    A  +P
Sbjct: 419 TPPSLPPSAPPSLPPSAPPSLP--MGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476



 Score = 26.2 bits (55), Expect = 9.6
 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
 Frame = +1

Query: 724 AALPPHXXKPXLPPP-----PPXXXLSXXXPPXPPXXPTKTAALSSP 849
           A  P     P +PP      PP    S   P  PP  P     +SSP
Sbjct: 221 AGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSP 267


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 20/57 (35%), Positives = 21/57 (36%)
 Frame = -2

Query: 802 GGGXXREXXRGGGGGGXVXXXGGGARPXXAPXGXEGXEXXRGGGSRXGKXXGGRXXG 632
           GG       RGG GGG     GGG        G  G      GGS  G+  GG   G
Sbjct: 16  GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGR--GGAKGG 70



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = -2

Query: 802 GGGXXREXXRGGGGGGXVXXXGGGARPXXAPXGXEGXEXXRGGGSR 665
           G G  R   RGGG GG     GG         G  G      GG++
Sbjct: 27  GFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/53 (30%), Positives = 19/53 (35%)
 Frame = +1

Query: 667  GSPPPAXXXSPPXHXGXXGAALPPHXXKPXLPPPPPXXXLSXXXPPXPPXXPT 825
            G  P     +PP       +A PP    P  PPPP         PP P   P+
Sbjct: 1680 GMAPAHPVSTPPVRPQ---SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPS 1729


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +1

Query: 673 PPPAXXXSPPX--HXGXXGAALPPHXXKPXLP--PPPPXXXLSXXXPPXPPXXP 822
           PPP+   +PP         ++LPP   +P  P   PP    L    PP PP  P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPP-PAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 670 SPPPAXXXSPPXHXGXXGAALPPHXXKPXLPPPPP 774
           SPPP+     P        +LP     P  PPPPP
Sbjct: 166 SPPPSFQ---PPSAAAPATSLPSDYNPPPPPPPPP 197



 Score = 24.6 bits (51), Expect(2) = 3.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 561 PPPPPXPLLP 590
           PPPPP P LP
Sbjct: 238 PPPPPPPTLP 247



 Score = 21.4 bits (43), Expect(2) = 3.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 549 FSXXPPPPPXP 581
           ++  PPPPP P
Sbjct: 187 YNPPPPPPPPP 197


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = -2

Query: 787 REXXRGGGGGGXVXXXGGGARPXXAPXGXEGXEXXRGGGSRXG 659
           R   RGG GG      GGG+R         G      GGSR G
Sbjct: 147 RGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
 Frame = +1

Query: 637  PXXPLLXFXXGSPPPAXXXSP-PXHXGXXGAALPPHXXKPXLPPPPPXXXLSXXXPPXPP 813
            P    L     +P  A   SP P       AA+        LPPPPP   ++   P    
Sbjct: 866  PMLGQLPMRRAAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIAS 925

Query: 814  XXPTKTAALSSP 849
              P K      P
Sbjct: 926  PPPPKVGETYHP 937


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +1

Query: 751 PXLPPPPPXXXLSXXXPPXPP--XXPTKTAALSSP 849
           P LPPP     L    PP PP    P+ T  ++ P
Sbjct: 39  PNLPPPFSVHQLQSFVPPQPPSSSSPSTTGTVAVP 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.142    0.484 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,083
Number of Sequences: 5004
Number of extensions: 23887
Number of successful extensions: 133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)