Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_G12
(944 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.8
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 30 2.3
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.1
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 29 5.4
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 7.1
05_06_0201 - 26331964-26332124,26334466-26334541,26334675-26334908 29 7.1
04_04_0679 + 27214577-27215023 29 7.1
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 29 7.1
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.7 bits (66), Expect = 1.8
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = +2
Query: 752 PGXXPXGXNPCXXQXXHXKXAPXTPXXKXPPLPGXFFXXXXPPPPRXXXXPKNXXPP 922
P P P Q + P P PPLP PPPP P PP
Sbjct: 564 PPPPPPPPPPPLPQSNYASSQPPPPPPP-PPLPNCLVPSPPPPPPPPPILPNRSVPP 619
Score = 28.7 bits (61), Expect = 7.1
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +2
Query: 824 PXXKXPPLPGXFFXXXXPPPPRXXXXPKNXXPP 922
P PPLP PPPP P PP
Sbjct: 620 PPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPP 652
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +2
Query: 770 GXNPCXXQXXHXKXAPXTPXXKXPPLPGXFFXXXXPPPPRXXXXPKNXXPP 922
G P Q P P PP P PPPP+ PK PP
Sbjct: 327 GSTPDTKQVTSPSPRPVQPSNAPPPPPPPPPPPPPPPPPKLNTAPKPPPPP 377
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.5 bits (63), Expect = 4.1
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 806 KXAPXTPXXKXPPLPGXFFXXXXPPPPRXXXXPKNXXP 919
K AP P K PP P PPPP+ P P
Sbjct: 333 KAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 29.1 bits (62), Expect = 5.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 824 PXXKXPPLPGXFFXXXXPPPPRXXXXPKNXXPP 922
P PPLP F PPPP P++ PP
Sbjct: 415 PQSPPPPLPSDAF-EQPPPPPEHPPPPESTSPP 446
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +1
Query: 742 PPXSXGIXXRXXPMXXPXGPXKXGPXXPXXXGPXFAXALFXXXGPPXPPXPXP 900
PP G + PM P P P A F PP PP P P
Sbjct: 12 PPPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPP 64
>05_06_0201 - 26331964-26332124,26334466-26334541,26334675-26334908
Length = 156
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 619 RRLRIGPLFRFLASLTXCARSSGC 690
RRLRIG + + CARSSGC
Sbjct: 4 RRLRIGKVLDCFSFSMCCARSSGC 27
>04_04_0679 + 27214577-27215023
Length = 148
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = -3
Query: 885 GGGGXXXXKKXPGKGGXXXXGVXGAXFXWXXWXXHGXXPXG 763
GGGG G+GG G G F W HG G
Sbjct: 71 GGGGGGGGGGVGGRGGSSGRGGHGGGFGWAGGQGHGGWGAG 111
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/58 (27%), Positives = 18/58 (31%)
Frame = +2
Query: 749 NPGXXPXGXNPCXXQXXHXKXAPXTPXXKXPPLPGXFFXXXXPPPPRXXXXPKNXXPP 922
NPG P + Q H +P PP P P PP P PP
Sbjct: 8 NPGDPPSPASARSGQRKHVPDWLNSPIWSAPPPPARHRAPSPPRPPPPPPPPTQPAPP 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,958,918
Number of Sequences: 37544
Number of extensions: 292010
Number of successful extensions: 838
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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