Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_G11
(871 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 65 1e-11
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 61 2e-10
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 60 5e-10
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 59 9e-10
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 58 1e-09
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 56 9e-09
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 54 3e-08
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 52 8e-08
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 46 9e-06
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 44 2e-05
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 38 0.001
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 32 0.092
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 31 0.28
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 31 0.28
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 30 0.37
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 30 0.37
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 29 1.1
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 27 2.6
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 26 6.1
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 64.9 bits (151), Expect = 1e-11
Identities = 34/98 (34%), Positives = 53/98 (54%)
Frame = +3
Query: 399 RSSFIGELGTGKTSIIKRYVHQFFXSTL*SNHRRGFRTESTELGLTYHNKIALWDIAGQE 578
++ IG+ G GK++++ R+ F S F T + L K +WD AGQE
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLD-NKKIKAQIWDTAGQE 70
Query: 579 RFGNXTRVYYKEAVGAFIVFDVSRVAXFDXVVKWKXDL 692
R+ T YY+ AVGA IV+D+++ + FD V +W +L
Sbjct: 71 RYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKEL 108
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 61.3 bits (142), Expect = 2e-10
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = +3
Query: 411 IGELGTGKTSIIKRYVHQFFXSTL*SNHRRGFRTESTEL-GLTYHNKIALWDIAGQERFG 587
IG+ G GK+ ++ R+ + + S F+ + EL G T K+ +WD AGQERF
Sbjct: 14 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTV--KLQIWDTAGQERFR 71
Query: 588 NXTRVYYKEAVGAFIVFDVSRVAXFDXVVKWKXDLD 695
T YY+ A G IV+DV+ F+ V +W ++D
Sbjct: 72 TITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEID 107
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 59.7 bits (138), Expect = 5e-10
Identities = 31/95 (32%), Positives = 49/95 (51%)
Frame = +3
Query: 396 IRSSFIGELGTGKTSIIKRYVHQFFXSTL*SNHRRGFRTESTELGLTYHNKIALWDIAGQ 575
I+ IG+ G GK+ ++ R+ F + + F+ + EL K+ +WD AGQ
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQ 68
Query: 576 ERFGNXTRVYYKEAVGAFIVFDVSRVAXFDXVVKW 680
ERF T YY+ A+G +++DV+ FD V W
Sbjct: 69 ERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTW 103
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 58.8 bits (136), Expect = 9e-10
Identities = 29/105 (27%), Positives = 53/105 (50%)
Frame = +3
Query: 378 NAGSIYIRSSFIGELGTGKTSIIKRYVHQFFXSTL*SNHRRGFRTESTELGLTYHNKIAL 557
N +I + +G+ GK+S++ R+V F S F T++ + K+ +
Sbjct: 9 NVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEI 68
Query: 558 WDIAGQERFGNXTRVYYKEAVGAFIVFDVSRVAXFDXVVKWKXDL 692
WD AGQER+ + +YY+ A A +V+D+++ A + W +L
Sbjct: 69 WDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKEL 113
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 58.4 bits (135), Expect = 1e-09
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Frame = +3
Query: 414 GELGTGKTSIIKRYVHQFFXSTL*SNHRRGFRTESTELGLTYHNK---IALWDIAGQERF 584
G GTGK+ +++R+V + + F + +G+ K + +WD AGQE+F
Sbjct: 16 GPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKF 75
Query: 585 GNXTRVYYKEAVGAFIVFDVSRVAXFDXVVKWKXDLDA 698
+ R YY+ A GA +V+DV+ F+ + W D+ A
Sbjct: 76 RSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRA 113
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 55.6 bits (128), Expect = 9e-09
Identities = 32/97 (32%), Positives = 52/97 (53%)
Frame = +3
Query: 408 FIGELGTGKTSIIKRYVHQFFXSTL*SNHRRGFRTESTELGLTYHNKIALWDIAGQERFG 587
F+GE GKTS+I R+++ F +T + F +++ L ++ LWD AGQERF
Sbjct: 16 FLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFR 74
Query: 588 NXTRVYYKEAVGAFIVFDVSRVAXFDXVVKWKXDLDA 698
+ Y +++ A IV+D++ F KW D+ A
Sbjct: 75 SLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRA 111
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 53.6 bits (123), Expect = 3e-08
Identities = 28/100 (28%), Positives = 51/100 (51%)
Frame = +3
Query: 390 IYIRSSFIGELGTGKTSIIKRYVHQFFXSTL*SNHRRGFRTESTELGLTYHNKIALWDIA 569
++++ +G+ G GKT ++ ++V+Q F + F T+ + + LWD A
Sbjct: 7 VFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVT-LQLWDTA 65
Query: 570 GQERFGNXTRVYYKEAVGAFIVFDVSRVAXFDXVVKWKXD 689
GQERF + +Y+ A IV++V+ FD V W+ +
Sbjct: 66 GQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQE 105
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 52.4 bits (120), Expect = 8e-08
Identities = 29/93 (31%), Positives = 48/93 (51%)
Frame = +3
Query: 411 IGELGTGKTSIIKRYVHQFFXSTL*SNHRRGFRTESTELGLTYHNKIALWDIAGQERFGN 590
+GE G GKTSI+ +YV++ F + F T+ + + LWD AGQERF +
Sbjct: 14 LGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVT-LQLWDTAGQERFQS 72
Query: 591 XTRVYYKEAVGAFIVFDVSRVAXFDXVVKWKXD 689
+Y+ A +V+DV+ F+ + W+ +
Sbjct: 73 LGVAFYRGADCCVLVYDVNNSKSFETLDSWRDE 105
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 45.6 bits (103), Expect = 9e-06
Identities = 25/98 (25%), Positives = 45/98 (45%)
Frame = +3
Query: 387 SIYIRSSFIGELGTGKTSIIKRYVHQFFXSTL*SNHRRGFRTESTELGLTYHNKIALWDI 566
++ I+ IG+ GKTS++ YV F F ++ + T ++WD+
Sbjct: 8 NVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNT-EITFSIWDL 66
Query: 567 AGQERFGNXTRVYYKEAVGAFIVFDVSRVAXFDXVVKW 680
GQ F N + +AV +FD+SR + + + +W
Sbjct: 67 GGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEW 104
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 44.4 bits (100), Expect = 2e-05
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Frame = +3
Query: 411 IGELGTGKTSIIKRYV----HQFFXSTL*SN-HRRGFRTESTELGLTYHNKIALWDIAGQ 575
+G+ GTGKT+ +KR++ + + +TL H F T E+ +WD AGQ
Sbjct: 15 VGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFN------VWDTAGQ 68
Query: 576 ERFGNXTRVYYKEAVGAFIVFDVSRVAXFDXVVKWKXDL 692
E+ G YY + I+FDV+ + V W DL
Sbjct: 69 EKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDL 107
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 38.3 bits (85), Expect = 0.001
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Frame = +3
Query: 390 IYIRSSFIGELGTGKTSII----KRYVHQFFXSTL*SNHRRGFRTESTELGLTYHNKIAL 557
IY + +G+ GKTS++ K Y Q + T+ N+ + + +++L
Sbjct: 12 IYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSI------ELSL 65
Query: 558 WDIAGQERFGNXTRVYYKEAVGAFIVFDV-SRVAXFDXVVKWKXDLDA 698
WD AGQE + + Y + I F V SR + + + KW ++ +
Sbjct: 66 WDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSS 113
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 32.3 bits (70), Expect = 0.092
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 540 HNKIALWDIAGQERFGNXTRVYYKEAVGAFIVFDVSRVAXFDXV-VKW 680
H ++ALWD AGQE + + Y ++ I F V D V KW
Sbjct: 53 HIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKW 100
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 30.7 bits (66), Expect = 0.28
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 540 HNKIALWDIAGQERFGNXTRVYYKEAVGAFIVFDVSRVAXFDXV-VKW 680
H ++ALWD AGQE + + Y ++ I F V D V KW
Sbjct: 53 HVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKW 100
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 30.7 bits (66), Expect = 0.28
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = +3
Query: 411 IGELGTGKTSIIKRYVHQFFXSTL*SNHRRGFRTESTELGLTYHNKIALWDIAGQERFGN 590
+G+ G GKT ++ + F + T+ T + ++ALWD AGQE +
Sbjct: 20 VGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQEEYDR 79
Query: 591 XTRVYYKEAVGAFIVFDVSRVAXFDXVV-KW 680
+ Y + + F + A + V KW
Sbjct: 80 LRPLSYPNSNVILLCFSIDCPASLNNVTEKW 110
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 30.3 bits (65), Expect = 0.37
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +3
Query: 384 GSIYIRSSFIGELGTGKTSIIKRYVHQFFXSTL*SNHRRGFRTESTELGLTYHN-KIALW 560
G +R +G GKT+I+ + +T+ + GF E+ E Y N +W
Sbjct: 14 GKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI---GFNVETVE----YRNISFTVW 66
Query: 561 DIAGQERFGNXTRVYYKEAVGAFIVFD 641
D+ GQ++ R Y++ G V D
Sbjct: 67 DVGGQDKIRPLWRHYFQNTQGIIFVVD 93
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 30.3 bits (65), Expect = 0.37
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +3
Query: 411 IGELGTGKTSIIKRYVHQFFXSTL*SNHRRGFRTESTELGLTYHNKIALWDIAGQERFGN 590
+G+ GKTS++ + +F + + ++ G + ++ALWD AGQE +
Sbjct: 14 VGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSV--QLALWDTAGQEEYER 71
Query: 591 XTRVYYKEAVGAFIVFDVSRVAXFDXV-VKWKXDLD 695
+ Y +A + F + + V KW +++
Sbjct: 72 LRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEIN 107
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 501 GFRTESTELGLTYHN-KIALWDIAGQERFGNXTRVYYKEAVGAFIVFD 641
GF E+ +TY N K +WD+ GQ++ R Y+ G V D
Sbjct: 54 GFNVET----VTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVD 97
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 27.5 bits (58), Expect = 2.6
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 396 IRSSFIGELGTGKTSIIKRYVHQFFXSTL*SNHRRGFRTESTEL-GLTYHNKIALWDIAG 572
+R +G GKT+I+K +++ + GF+ + E+ GL + +WDI G
Sbjct: 17 VRVLLLGLDNAGKTTILKCLLNEDVNEV---SPTFGFQIRTLEVEGLRF----TIWDIGG 69
Query: 573 QERFGNXTRVYYKEAVGAFIVFD 641
Q+ N + Y++ V D
Sbjct: 70 QKTLRNFWKNYFESTEAIIWVVD 92
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/91 (20%), Positives = 36/91 (39%)
Frame = +3
Query: 399 RSSFIGELGTGKTSIIKRYVHQFFXSTL*SNHRRGFRTESTELGLTYHNKIALWDIAGQE 578
R + +G GK+S+ +YV F + F G + +I D AGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEII--DTAGQD 65
Query: 579 RFGNXTRVYYKEAVGAFIVFDVSRVAXFDXV 671
+ + G +V+ ++ + F+ V
Sbjct: 66 EYSILNSKHSIGIHGYVLVYSITSKSSFEMV 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,669
Number of Sequences: 5004
Number of extensions: 54989
Number of successful extensions: 162
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -