Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_G07
         (1216 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.25 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
 Frame = +3

Query: 1020 PPXXXXXPPPXPPXXPPPPXXXXPP-PPXXPPXXSPP--PP 1133
            P      P P P   P  P    PP P   PP   PP  PP
Sbjct: 16   PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 26.6 bits (56), Expect = 0.44
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = +3

Query: 975  SSLXPXPXSPXXXXXPPXXXXXPPPXPPXXPPPPXXXXPPPPXXP 1109
            SS  P P  P     P       PP P   PPP      PP   P
Sbjct: 17   SSGAPGP-QPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/41 (29%), Positives = 13/41 (31%)
 Frame = +3

Query: 948  PPXXPPXXXSSLXPXPXSPXXXXXPPXXXXXPPPXPPXXPP 1070
            P    P    S    P +P     P      PP  PP  PP
Sbjct: 16   PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 1053 PPXXPPPPXXXXPPPPXXPPXXSPPPPXXXXXXXPP 1160
            P   P P      P    PP  S  PP       PP
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 1044 PPXPPXXPPPPXXXXP 1091
            PP P   PPPP    P
Sbjct: 338  PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 930 PPXPPPPPXXP 962
           PP P PPP  P
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 930  PPXPPPPP 953
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,074
Number of Sequences: 438
Number of extensions: 10937
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41572845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)