Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_G05
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    58   2e-09
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    27   3.6  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 29/52 (55%), Positives = 37/52 (71%)
 Frame = +2

Query: 122 LQEKFDQAAANVKNLKALPTYAQLLNLYAHFKQATVGDADPANRPGLLELEG 277
           +   F+QAAA+VK LK  P   +LL LYA FKQATVGD +   +PGLL+L+G
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGD-NNTEKPGLLDLKG 51



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = +3

Query: 267 NLKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGLIASIGLK 386
           +LKGK K++AW +L G SKEDA   YI  V+ L    G+K
Sbjct: 48  DLKGKFKWNAWEELKGKSKEDAASEYISFVDELKTKYGMK 87


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 137 DQAAANVKNLKALPTYAQLLNLYAHFKQATVGDAD 241
           DQ   NV++  + P + QL+ L+    +A V DAD
Sbjct: 40  DQFFRNVRDTISEPKFTQLMELWLEKSRAEVPDAD 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,907
Number of Sequences: 5004
Number of extensions: 52916
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)