Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_G03
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0661 - 24100918-24101940                                         29   6.5  
11_04_0009 - 12132781-12133272                                         28   8.6  

>01_05_0661 - 24100918-24101940
          Length = 340

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = -3

Query: 296 RTSIAGPALTMPSRMFLPIFSIFLKIFHLGSGAALVMLKASTRAKTKDRIFAKFSCKCYV 117
           R + A P  TM     L   + F KI +LG GA+ V+ K   R      +FA      Y 
Sbjct: 20  RPAAAAPEATMMDLGQLLRLTDFDKIANLGDGASGVVAKVLLRGCGSSAVFA-LKTAHYC 78

Query: 116 NSNADVKTQA 87
              A+V+ +A
Sbjct: 79  GGGAEVEVEA 88


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 223 RSSTWAREQRWSCSKPAPERRRRIGSLR 140
           R   W RE+R S  +  P +RRR+G  R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,949,318
Number of Sequences: 37544
Number of extensions: 187914
Number of successful extensions: 335
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)