Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_F22
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    32   0.094
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    29   0.88 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.5  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   4.7  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    27   4.7  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   6.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   6.2  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   8.2  

>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
 Frame = +1

Query: 370 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPXNRI 549
           +K     W +    S A+Q     S  T      A R  P  Q  D+W ++    P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183

Query: 550 AKY-TASDAYASTTLISAVV-RNTTTFXSSITERAXKCLTA 666
           ++Y    + YA  T  S +   N T F ++  +   + L A
Sbjct: 184 SQYANMPENYALNTKKSKISNENDTIFKANFQQNKYESLHA 224


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 622 TWWYCGP--RH*SELSRHKHRWRYTSQSD 542
           T+WY  P  RH  E  +  H W Y+S  D
Sbjct: 44  TYWYPPPPPRHHKEHKKSHHHWEYSSDDD 72


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 417  CSAGRVCEINEHGDAMCNCIKDC 485
            C+A R+C++ E       C+ DC
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
 Frame = +1

Query: 328 PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPD 507
           P   T  +RS      T   ++     ++T+ Q  S  + N+ TP +T+S +V    TP 
Sbjct: 339 PAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTP-ITSS-SVLNSSTP- 395

Query: 508 AWCAQTSTKPXNRIAKYTASDAY-ASTTLISAVVRNTTTFXSSIT 639
                TS+   N     T+S    +ST + S+ + N++T  +S T
Sbjct: 396 ----ITSSSILNTSTPITSSSVLNSSTPITSSSILNSSTPITSST 436


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 418 AAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPXNRIAKYTASDAYASTT 588
           A+  VSA +    TP V+++    +        + TS    + I+  T+S A AS T
Sbjct: 233 ASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSSSASASPT 289


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = -1

Query: 449 FVDFADTSCAAVDFQARVFHVDFFVFILFIRDLVEKVVNSGYFCLMVSLLVQALRHSVLD 270
           ++ F +   + V+   RV+ VD    +  +    +  + +  + L +SLL+ A   + + 
Sbjct: 354 WISFDEFVTSDVEGSLRVYKVDGKAPVSTVSHAHDNSIVALRYNLRISLLLTASSDTTVK 413

Query: 269 VFSLRDVPAAELLRRWTFSS 210
           ++S  D  A E L  ++FSS
Sbjct: 414 LWSRGDAGAFECLHVFSFSS 433


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 323 FCLMVSLLVQALRHSVLDVFSLRD 252
           FCL ++ ++  LR+SV  V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 19/100 (19%), Positives = 40/100 (40%)
 Frame = +1

Query: 412  STAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPXNRIAKYTASDAYASTTL 591
            +++A   S  ST +       S  +PT        + T T+P    ++ +     ++ + 
Sbjct: 735  NSSAYPSSGSSTFSRLSSTLTSSIIPTETFGSTSGSATGTRPTGSSSQGSVVPTTSTGSS 794

Query: 592  ISAVVRNTTTFXSSITERAXKCLTALKXXCLTSPXXCGTG 711
            +++    TTT  + +TE +    T +    +      GTG
Sbjct: 795  VTSTGTGTTTGVTEVTETSTFETTEIITSTIEPTTASGTG 834


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
 Frame = +1

Query: 331 ELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVT--ASRTVPTRQTP 504
           E+TT +    M+ + T  +  + +   +T  ++ +  +   ET  +   A+ T P  +T 
Sbjct: 42  EITTMTIP--MEEITTMTTPMEEITTITTPMEETTTITPMVETTTILPMAAMTTPMVETT 99

Query: 505 DAWCAQTSTKPXNRIAKYTASDAYASTTLISAVVRNTTTFXSSITERAXKCLTALKXXCL 684
                +T+T P   +   T +    +TT+   V    T    ++T    +  T L    +
Sbjct: 100 TIPTVETTTTPM--VETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMAAM 157

Query: 685 TSP 693
           T+P
Sbjct: 158 TTP 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,706
Number of Sequences: 5004
Number of extensions: 43982
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)