Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_F22
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845     30   2.1  
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724...    29   3.7  
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333...    29   6.5  
03_02_0520 + 9092020-9092079,9092253-9093047                           29   6.5  
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11...    28   8.6  
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431           28   8.6  

>03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845
          Length = 439

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = -1

Query: 365 FIRDLVEKVVNSGY--FCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSRGADPA 192
           F+ D    +  SG+  + LM+     ALR +V   F         L R W FS  G  P 
Sbjct: 9   FVVDCGRTIFFSGFNAYWLMMMAADPALRGAVATAFQQASAHGLNLARTWAFSDGGDQPL 68

Query: 191 VPTP 180
             +P
Sbjct: 69  QSSP 72


>09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,
            7246502-7246522
          Length = 1012

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -1

Query: 233  LRRWTFSSRGADPAVPTPHTTSVGGANDRDH*GQRKKTLHLAFR*FVSM*SRRQXRRKP 57
            LR+ T S+  A PA+P+   TS   +   DH G  +K L    +   ++  + Q + KP
Sbjct: 950  LRQHTSSALQAQPALPSGPQTSQQPSAQEDHHGDPQKRLQATLQLAATLLQQIQQQSKP 1008


>12_01_0423 +
           3337401-3337419,3337777-3338235,3338650-3338735,
           3338974-3339022,3339225-3339533,3339555-3339710,
           3339871-3340086,3340404-3340906,3341050-3341116,
           3341215-3341272,3341561-3341699,3341840-3341956,
           3342069-3342246,3342459-3343093
          Length = 996

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 475 SRTVPTRQTPDAWCAQTSTKPXNRIAKYTASDAY 576
           +R  P  QTPDA  A + T+P  ++   +A +AY
Sbjct: 380 TRIQPYTQTPDADSATSGTQPAAKLNSISAMEAY 413


>03_02_0520 + 9092020-9092079,9092253-9093047
          Length = 284

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 278 VLDVFSLRDVPAAELLRRWTFSSR 207
           VLD+ +++ +PA  +L+RWT  +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161


>11_01_0014 +
           108647-108816,109704-109803,109891-110018,110232-110394,
           110491-110603,111080-111118,111319-111402,111486-111534,
           111624-111715,111999-112128,112225-112301,112377-113995,
           114348-114545,114635-115173
          Length = 1166

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 394 KTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 537
           +T A    ++Q ++   T+ ++   ++S TV + + P +W   TST P
Sbjct: 390 RTTATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 437


>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
          Length = 370

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 341 VVNSGYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 207
           + + G F  +  L   AL+  VLD+ ++  +PA  +L+RWT  +R
Sbjct: 177 ICSCGQFNRIGILCGHALK--VLDLMNIESLPAQYILKRWTREAR 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,886,132
Number of Sequences: 37544
Number of extensions: 360333
Number of successful extensions: 955
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)