Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_F19
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.92 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   2.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   7.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 864 PLXPXXPSPPPXPPPXP 914
           PL P  P+PPP P P P
Sbjct: 468 PLPPAAPAPPPAPAPAP 484


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.0 bits (47), Expect(2) = 2.1
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 864 PLXPXXPSPPPXPPP 908
           P  P    PPP PPP
Sbjct: 753 PPAPIMGGPPPPPPP 767



 Score = 23.0 bits (47), Expect(2) = 2.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 888 PPPXPPPXP 914
           PPP PPP P
Sbjct: 775 PPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.4 bits (48), Expect(2) = 7.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 867 LXPXXPSPPPXPP 905
           L P  P PPP PP
Sbjct: 4   LPPGNPPPPPPPP 16



 Score = 20.6 bits (41), Expect(2) = 7.1
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 888 PPPXPPP 908
           PPP PPP
Sbjct: 24  PPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,798
Number of Sequences: 5004
Number of extensions: 23066
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)