Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_F16
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 258 6e-70
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 256 4e-69
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 43 7e-05
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.2
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 4.7
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 26 8.1
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 8.1
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 258 bits (633), Expect = 6e-70
Identities = 125/184 (67%), Positives = 141/184 (76%)
Frame = +1
Query: 172 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 351
+G K L ME YV+KRR+DG H+INL +TWEKLVLAAR + IENPADV VISSRP+G
Sbjct: 28 IGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGH 87
Query: 352 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLXPAQDHQPITEASYVNIPV 531
RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV P D Q I EAS+VNIPV
Sbjct: 88 RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPV 147
Query: 532 IALCNTDSPLRFVDIAIPCNXKSSHSIGLMWWLLAREVLRLXGVLPRDQRWDVVVDLXFY 711
IALC+TDS L VD+AIP N K SIGL W+LLAREVLRL G + R W+V+ DL FY
Sbjct: 148 IALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFY 207
Query: 712 RDPE 723
RDPE
Sbjct: 208 RDPE 211
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 117 VLALNEEDVTKMLAATTHLGAENV 188
VL ++D+ +LAA +H+G++N+
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNL 33
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 256 bits (626), Expect = 4e-69
Identities = 121/184 (65%), Positives = 141/184 (76%)
Frame = +1
Query: 172 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 351
+G K L M+ YV+KRR+DG H++NL +TWEKLVLAAR + IENPADV V+S+R +G
Sbjct: 27 IGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGH 86
Query: 352 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLXPAQDHQPITEASYVNIPV 531
RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V P D Q I EAS+VNIPV
Sbjct: 87 RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPV 146
Query: 532 IALCNTDSPLRFVDIAIPCNXKSSHSIGLMWWLLAREVLRLXGVLPRDQRWDVVVDLXFY 711
IALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+ G L R WDV+ DL FY
Sbjct: 147 IALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFY 206
Query: 712 RDPE 723
RDPE
Sbjct: 207 RDPE 210
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 105 GGLDVLALNEEDVTKMLAATTHLGAENV 188
G ++L +ED+ ++LAA H+G++N+
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNL 32
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 42.7 bits (96), Expect = 7e-05
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 25/171 (14%)
Frame = +1
Query: 202 ETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQR-AVLKFAAH 378
+ ++Y +R +G H+I+L +T L A V +I + + GQ+ +V+ A
Sbjct: 72 QPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGIILFIGTRNGQKDSVVAAAKR 130
Query: 379 TGATPIAGRFTPGAFTN--QIQA----------------------AFREPRLLIVLXPAQ 486
I R+ PG TN ++Q ++ P L+++L P +
Sbjct: 131 ARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQTDKKPSYVFPDLMVILNPLE 190
Query: 487 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNXKSSHSIGLMWWLLAR 639
+ EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 191 NKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 241 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 417
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 4.7
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -2
Query: 504 SNGLMVLCRXQYNQETRFTECSLDLVSKSTWXETSRNRRSTGVRGKLQYSTLTEGP**DD 325
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 324 EHISGVLDG 298
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -3
Query: 614 PIEWEDLXLHGIAMSTNLSGESVLHKAITGMLTYEASVMG 495
PIE+E++ + G+ + SG++ LH+AI + + + G
Sbjct: 49 PIEFEEIDVTGMEKNNKSSGDA-LHEAIQSLKRNKVGLKG 87
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 8.1
Identities = 20/80 (25%), Positives = 37/80 (46%)
Frame = +1
Query: 115 TCSPSTRKMSPKCLLQPPILGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAV 294
TC ++S + P+LG + S + T++ RA+G + + T + A V
Sbjct: 443 TCVMLFSRVSTIAVTVSPVLG---IISSIITWLVVARAEGGKTLTIETTGANNPMLAGNV 499
Query: 295 VAIENPADVFVISSRPFGQR 354
V + +PA +I S F ++
Sbjct: 500 VGLLSPALYILILSIIFPEK 519
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,703
Number of Sequences: 5004
Number of extensions: 64511
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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